Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K13
         (484 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   3.0  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   4.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   5.2  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   5.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.2  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 82  NFFKEIKCQLFSGTTIKLPFGT*GD 8
           N F+ I+ Q+ SG+T K+ F   GD
Sbjct: 330 NLFEFIRKQVLSGSTGKVAFDDNGD 354


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -1

Query: 457 EN*VKFYIYQNIFEKKNFRVIIN--YRKQKYL 368
           E+ V  Y+Y+ I   K    IIN  +   KYL
Sbjct: 34  EDRVTMYVYEEIINGKKLTEIINETHENVKYL 65


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 439 YIYQNIFEKKNFRVIINYRKQKYLN 365
           Y Y N +   N     NY+K +Y N
Sbjct: 92  YNYNNNYNNYNNNYNTNYKKLQYYN 116


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -3

Query: 401 CHYKLQKTEIFKFSKKIQTNRIYNKIKDQIG*Y 303
           C   L   E    S     NR Y+ I+D IG Y
Sbjct: 454 CLLFLMFFECIAISWAFGVNRFYDGIRDMIGYY 486


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -3

Query: 401 CHYKLQKTEIFKFSKKIQTNRIYNKIKDQIG*Y 303
           C   L   E    S     NR Y+ I+D IG Y
Sbjct: 507 CLLFLMFFECIAISWAFGVNRFYDGIRDMIGYY 539


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 274 KYTGYKFLPVY*PI*SLILL*MRFVWIFLE 363
           ++TGY  + VY P   +++L     WI  E
Sbjct: 242 RHTGYFLIQVYVPCVLIVVLSWVSFWIHRE 271


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 300 CILTNLIFNFIVNAICLDFFRE 365
           C+L  L+ N I+  + + FF +
Sbjct: 94  CMLLLLVANLIILPVAISFFND 115


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 300 CILTNLIFNFIVNAICLDFFRE 365
           C+L  L+ N I+  + + FF +
Sbjct: 94  CMLLLLVANLIILPVAISFFND 115


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 300 CILTNLIFNFIVNAICLDFFRE 365
           C+L  L+ N I+  + + FF +
Sbjct: 94  CMLLLLVANLIILPVAISFFND 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,322
Number of Sequences: 438
Number of extensions: 2865
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)