Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K12
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe...    71   7e-14
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    26   1.8  
SPBC29A3.02c |his7||phosphoribosyl-AMP cyclohydrolase/phosphorib...    24   5.6  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    24   7.5  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    24   7.5  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    23   9.8  
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    23   9.8  

>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 305

 Score = 70.5 bits (165), Expect = 7e-14
 Identities = 35/80 (43%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
 Frame = +1

Query: 106 VSRAY-VPRPGSAFPLVFCEFSHLPNNTLQWMYDQYSFQVIPVMGQLVAGQWKPYQYLVE 282
           + +AY V +PG  F  +  EFS +    L  +Y QYSF+++P++G ++AG  + Y+YLVE
Sbjct: 204 LEQAYRVLKPGGVFSCL--EFSKVYPAPLAELYRQYSFKILPLLGTIIAGDSQSYEYLVE 261

Query: 283 SIRQFPNQEKFKGMIEEAGF 342
           SI +FP+ + F  MIE+AGF
Sbjct: 262 SIERFPDAKTFAKMIEDAGF 281



 Score = 58.8 bits (136), Expect = 2e-10
 Identities = 28/38 (73%), Positives = 30/38 (78%)
 Frame = +2

Query: 23  LPDESYSAYTIAFGIRNCTHIEKVLEEAYRVLTFPGRV 136
           +PD S   YTIAFGIRNCTHI KVLE+AYRVL  PG V
Sbjct: 180 IPDNSIDMYTIAFGIRNCTHIPKVLEQAYRVLK-PGGV 216


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = -3

Query: 139 RNPAGERKHAIRLFKDLFNMR----AIPYPKCY 53
           RN AG  +HA+RL K L ++     A+ +  CY
Sbjct: 212 RNIAGHNQHAVRLEKSLADLHQKPAALVFGSCY 244


>SPBC29A3.02c |his7||phosphoribosyl-AMP
           cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase
           His7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 157 KTPMERRNPAGERKHAIRLFKDLFNMRA 74
           KT ++R+N A E  +  RLF D   +RA
Sbjct: 308 KTLIDRKNNAPEGSYTARLFSDPKLLRA 335


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = +2

Query: 59  FGIRNCTHIEKVLEE----AYRVLTFPGRVPPFHW 151
           +G+ N TH+   +EE    A  ++  P    P HW
Sbjct: 667 YGVNNKTHVHDFIEEYGLDANELIHVPSIQHPGHW 701


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 160 RKTPMERRNPAGERKHAIRLFKDLFN 83
           R+T +ER +  G     + + KDLFN
Sbjct: 617 RRTKLERADDLGLPPRVVEVRKDLFN 642


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 142 FPLVFCEFSHLPNNTLQWMY 201
           FPLV  +   +P +TLQW+Y
Sbjct: 641 FPLV--KVCGVPRDTLQWLY 658


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 160 EFSHLPNNTLQWMY 201
           +FSH+P NT  W Y
Sbjct: 200 KFSHVPLNTGHWKY 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,485,455
Number of Sequences: 5004
Number of extensions: 28802
Number of successful extensions: 68
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)