Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_K12
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0375 - 43152161-43152262,43152556-43152664,43153433-431535... 83 6e-17
04_04_0453 - 25346114-25346214,25346600-25346699,25346901-253469... 31 0.24
02_05_0142 - 26227792-26228346,26228486-26228608,26229824-262300... 30 0.55
02_04_0256 + 21331396-21332268 29 1.3
04_03_0053 - 10286076-10286516,10286560-10287586,10287756-102880... 28 1.7
09_02_0030 + 3115502-3115750,3115835-3116104,3116193-3116633,311... 28 2.2
03_02_0767 - 11009682-11010251 28 2.2
12_02_0385 + 18424617-18425594,18426811-18426850,18427581-184276... 27 2.9
12_01_0427 + 3359766-3360092,3360425-3360541,3360738-3360893,336... 27 2.9
10_08_0477 - 18188280-18188490,18188572-18188748,18189141-181893... 27 5.1
02_05_0070 - 25584690-25584806,25585151-25585312,25585396-255854... 26 6.7
>01_07_0375 -
43152161-43152262,43152556-43152664,43153433-43153504,
43153690-43153834,43153930-43154085,43154557-43154618,
43154695-43155020
Length = 323
Score = 83.0 bits (196), Expect = 6e-17
Identities = 44/82 (53%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Frame = +1
Query: 100 RGVSRAY-VPRPGSAFPLVFCEFSHLPNNTLQWMYDQYSFQVIPVMGQLVAGQWKPYQYL 276
+ +S AY V + G F + E SH+ + +YD YSF VIP +G+LVAG + YQYL
Sbjct: 223 KALSEAYRVLKRGGRF--LCLELSHVDVPLFKEIYDVYSFSVIPAVGELVAGDRQSYQYL 280
Query: 277 VESIRQFPNQEKFKGMIEEAGF 342
VESIR+FPNQEKF MI+EAGF
Sbjct: 281 VESIRRFPNQEKFAQMIQEAGF 302
Score = 53.2 bits (122), Expect = 5e-08
Identities = 26/39 (66%), Positives = 27/39 (69%)
Frame = +2
Query: 17 LALPDESYSAYTIAFGIRNCTHIEKVLEEAYRVLTFPGR 133
L+ D S YTIAFGIRN THIEK L EAYRVL GR
Sbjct: 199 LSFEDGSMDGYTIAFGIRNVTHIEKALSEAYRVLKRGGR 237
>04_04_0453 -
25346114-25346214,25346600-25346699,25346901-25346962,
25347053-25347186,25347320-25347408,25347667-25347696
Length = 171
Score = 31.1 bits (67), Expect = 0.24
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +1
Query: 121 VPRPGS-AFPLVFCEFSHLPNNTLQ-WMYDQYSFQVIPVMGQLVAGQWKPYQYLVESIRQ 294
V +PGS A L F + S L +LQ WM D V+P+ G + Y+YL SI
Sbjct: 81 VLKPGSRASILDFNKSSSLFTTSLQSWMIDNV---VVPLASGY--GLTEEYKYLKSSILH 135
Query: 295 FPNQEKFKGMIEEAGF 342
+ +++ + + +EAGF
Sbjct: 136 YLTEKELEELAKEAGF 151
Score = 29.5 bits (63), Expect = 0.72
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 11 LKLALPDESYSAYTIAFGIRNCTHIEKVLEEAYRVLTFPG 130
L L D + A T+ +G+RN K + E +RVL PG
Sbjct: 47 LDLPFTDCYFDAVTVGYGLRNVVDKPKAMREIFRVLK-PG 85
>02_05_0142 -
26227792-26228346,26228486-26228608,26229824-26230084,
26230658-26231116
Length = 465
Score = 29.9 bits (64), Expect = 0.55
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +1
Query: 106 VSRAYVPRPGSAFPLVFCEFSHLPNNTLQWMYDQYSFQVIPVMGQLVAGQWKPYQYLVES 285
VS A + G A P + E HL N + W + ++++ + + K Q L+E
Sbjct: 278 VSTAVMGTYGYAAP-DYVETGHLTNKSDVWSFGVVLYEILTGRRSMERNRPKNEQKLLEW 336
Query: 286 IRQFPNQEK 312
+RQ+P + K
Sbjct: 337 VRQYPVETK 345
>02_04_0256 + 21331396-21332268
Length = 290
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 92 VLEEAYRVLTFPGRVPPFHWCFASSVTSL 178
+L A R+L PGR+PP S+ SL
Sbjct: 137 LLSRAQRLLAHPGRLPPVRLILVDSIASL 165
>04_03_0053 -
10286076-10286516,10286560-10287586,10287756-10288096,
10288198-10288248
Length = 619
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 80 HIEKVLEEAYRVLTFPGRVPPFHWCFASSVTSLTTRCS 193
HI Y FP VP H CFA+ V +TT S
Sbjct: 441 HIFHQSASMYMTDLFPNVVPQGHLCFANFVCIITTESS 478
>09_02_0030 +
3115502-3115750,3115835-3116104,3116193-3116633,
3116697-3116783,3116872-3116973,3117532-3117631,
3117791-3117807
Length = 421
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 310 FPDSGTGVCFQ-LGTGTASTVQRRVVPSLVSLETNTDHTSTAAC 182
F ++ TG+C + TG+ +++ PS+V L DHT+ C
Sbjct: 303 FWNTHTGLCLNSVDTGSQNSLALWKYPSMVKLAELEDHTARVLC 346
>03_02_0767 - 11009682-11010251
Length = 189
Score = 27.9 bits (59), Expect = 2.2
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = -1
Query: 327 DHALKFFLIRELAYAFN*VLVRLPLSSDELSHHWYHLKRILIIHPLQRVVREVTELAK 154
DH + R A + L RL L D+ H W H+ R + V R EL K
Sbjct: 76 DHLARDVFHRHFTSADDTELARLCLHLDDAGHRWKHVSRAVYGRSSCAVKRRWRELRK 133
>12_02_0385 +
18424617-18425594,18426811-18426850,18427581-18427636,
18428032-18428151
Length = 397
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 124 ERKHAIRLFKDLF-NMRAIPYPKCYRV 47
E KH +R + F NM PYP+C R+
Sbjct: 258 EMKHYVRFSRQRFYNMFVKPYPECERI 284
>12_01_0427 +
3359766-3360092,3360425-3360541,3360738-3360893,
3361009-3361144,3361303-3361436,3361832-3361987,
3362496-3362594,3362817-3362932,3363358-3363532,
3363807-3363885,3363989-3364132,3364206-3364319,
3364415-3364536,3364929-3365011,3365091-3365188,
3365300-3365420,3366237-3366333,3366782-3366874,
3366948-3367053,3367395-3367540,3367617-3367697,
3367838-3367921,3367997-3368132,3368334-3368400,
3368943-3369102
Length = 1048
Score = 27.5 bits (58), Expect = 2.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 234 HHWYHLKRILIIHPLQRVVREVTELAKHQW 145
+H YH KR L +H +++ +R + K W
Sbjct: 158 NHRYHAKRCLYLHVIEKSLRSSPLIQKISW 187
>10_08_0477 -
18188280-18188490,18188572-18188748,18189141-18189304,
18189667-18189720,18190572-18191054
Length = 362
Score = 26.6 bits (56), Expect = 5.1
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 17 LALPDESYSAYTIAFGIRNCTHIEKVLEEAYRVLTFPGRVPPFHWC 154
LA DE+ + Y RN IE+V + + ++LTF VP C
Sbjct: 193 LANEDEALALYFDKLNDRNQDAIEEVKKSSKQILTFSHFVPRQELC 238
>02_05_0070 -
25584690-25584806,25585151-25585312,25585396-25585491,
25585894-25585955,25586035-25586110,25586195-25586277,
25586456-25586778,25586882-25586928,25587014-25587150,
25587250-25587322,25588159-25588251,25588543-25588632,
25588684-25588786,25588869-25588981,25589181-25589778,
25589888-25590065,25590277-25590296,25590713-25590882,
25591245-25591485,25592997-25593199
Length = 994
Score = 26.2 bits (55), Expect = 6.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 137 PPFHWCFASSVTSLTTRCSGCMISI 211
P +H+C SS + T SGC + +
Sbjct: 754 PVYHYCAVSSFSEYTVVHSGCAVKV 778
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,929,828
Number of Sequences: 37544
Number of extensions: 204348
Number of successful extensions: 512
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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