Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_K12
(342 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14429-7|AAK93871.1| 285|Caenorhabditis elegans Coenzyme q (ubi... 75 1e-14
AF068709-15|AAC19246.2| 317|Caenorhabditis elegans Serpentine r... 29 0.87
Z68493-4|CAA92791.1| 520|Caenorhabditis elegans Hypothetical pr... 27 2.7
Z95559-2|CAB09000.3| 520|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 27 3.5
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 27 3.5
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z68121-3|CAA92205.1| 134|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z68119-9|CAA92198.1| 134|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z66521-1|CAA91393.2| 382|Caenorhabditis elegans Hypothetical pr... 26 6.1
AF036693-3|AAO61431.1| 544|Caenorhabditis elegans Hypothetical ... 26 6.1
>L14429-7|AAK93871.1| 285|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 5 protein.
Length = 285
Score = 75.4 bits (177), Expect = 1e-14
Identities = 41/84 (48%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Frame = +1
Query: 94 P*RGVSRAY-VPRPGSAFPLVFCEFSHLPNNTLQWMYDQYSFQVIPVMGQLVAGQWKPYQ 270
P + V A+ V +PG L EFS + N+ L+ +YD YSF VIPV+G+++A YQ
Sbjct: 182 PEKVVREAFRVLKPGGQ--LAILEFSEV-NSALKPIYDAYSFNVIPVLGEILASDRASYQ 238
Query: 271 YLVESIRQFPNQEKFKGMIEEAGF 342
YLVESIR+FPNQ++F +I E GF
Sbjct: 239 YLVESIRKFPNQDEFARIIREEGF 262
Score = 46.4 bits (105), Expect = 5e-06
Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Frame = +2
Query: 23 LPDES--YSAYTIAFGIRNCTHIEKVLEEAYRVLTFPG 130
+P ES Y +T++FGIRNCTH EKV+ EA+RVL PG
Sbjct: 160 MPFESNTYDLFTMSFGIRNCTHPEKVVREAFRVLK-PG 196
>AF068709-15|AAC19246.2| 317|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 62 protein.
Length = 317
Score = 29.1 bits (62), Expect = 0.87
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 148 LVFCEFSHLPNNTLQWMYDQYSFQVIPVMGQLV 246
LV C FSHLP ++++D + ++V V GQL+
Sbjct: 147 LVVCFFSHLP----KYLWDGFLYEVYIVNGQLI 175
>Z68493-4|CAA92791.1| 520|Caenorhabditis elegans Hypothetical
protein C33A12.6 protein.
Length = 520
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = +1
Query: 163 FSHLPNNTLQWMYDQYSFQVIPVMGQLVAGQWKPYQYLVESIR 291
F +P+ T W Y+ S ++ + + G W P L+ R
Sbjct: 312 FKSMPDTTFIWKYENTSDPIVNHLDNVHLGDWLPQNELLADPR 354
>Z95559-2|CAB09000.3| 520|Caenorhabditis elegans Hypothetical
protein Y41E3.3 protein.
Length = 520
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 259 KPYQYLVESIRQFPNQEKFK 318
KP+Q LV +R F NQE+++
Sbjct: 212 KPFQQLVFCVRDFKNQEEYE 231
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 217 QVIPVMGQLVAGQWKPYQYLVESIRQFPNQE 309
++ P+M G + +Y+V S +QFPN++
Sbjct: 1524 KISPMMAAFRKGHVEIVKYMVNSAKQFPNEQ 1554
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 217 QVIPVMGQLVAGQWKPYQYLVESIRQFPNQE 309
++ P+M G + +Y+V S +QFPN++
Sbjct: 1524 KISPMMAAFRKGHVEIVKYMVNSAKQFPNEQ 1554
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
protein R11A8.7d protein.
Length = 1427
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 217 QVIPVMGQLVAGQWKPYQYLVESIRQFPNQE 309
++ P+M G + +Y+V S +QFPN++
Sbjct: 345 KISPMMAAFRKGHVEIVKYMVNSAKQFPNEQ 375
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical
protein R11A8.7c protein.
Length = 1405
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 217 QVIPVMGQLVAGQWKPYQYLVESIRQFPNQE 309
++ P+M G + +Y+V S +QFPN++
Sbjct: 345 KISPMMAAFRKGHVEIVKYMVNSAKQFPNEQ 375
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 217 QVIPVMGQLVAGQWKPYQYLVESIRQFPNQE 309
++ P+M G + +Y+V S +QFPN++
Sbjct: 1524 KISPMMAAFRKGHVEIVKYMVNSAKQFPNEQ 1554
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 217 QVIPVMGQLVAGQWKPYQYLVESIRQFPNQE 309
++ P+M G + +Y+V S +QFPN++
Sbjct: 1524 KISPMMAAFRKGHVEIVKYMVNSAKQFPNEQ 1554
>Z68121-3|CAA92205.1| 134|Caenorhabditis elegans Hypothetical
protein T18D3.8 protein.
Length = 134
Score = 27.1 bits (57), Expect = 3.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 214 FQVIPVMGQLVAGQWK 261
FQV+PV G+ G+WK
Sbjct: 27 FQVVPVPGEFTRGRWK 42
>Z68119-9|CAA92198.1| 134|Caenorhabditis elegans Hypothetical
protein T18D3.8 protein.
Length = 134
Score = 27.1 bits (57), Expect = 3.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 214 FQVIPVMGQLVAGQWK 261
FQV+PV G+ G+WK
Sbjct: 27 FQVVPVPGEFTRGRWK 42
>Z66521-1|CAA91393.2| 382|Caenorhabditis elegans Hypothetical
protein W02B12.1 protein.
Length = 382
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 263 GFHCPATSCPITGIT*N 213
G HCP+T+CP T N
Sbjct: 352 GLHCPSTNCPFFPTTKN 368
>AF036693-3|AAO61431.1| 544|Caenorhabditis elegans Hypothetical
protein C49A9.8 protein.
Length = 544
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/43 (23%), Positives = 18/43 (41%)
Frame = +1
Query: 163 FSHLPNNTLQWMYDQYSFQVIPVMGQLVAGQWKPYQYLVESIR 291
FS +P+ T W Y+ + + + + W P L+ R
Sbjct: 341 FSSMPDTTFIWKYEDPNVNIAKNLDNVFISSWLPQNELLADSR 383
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,226,644
Number of Sequences: 27780
Number of extensions: 166409
Number of successful extensions: 452
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -