Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K12
         (342 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    27   0.047
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    27   0.047
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    27   0.047
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   2.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   5.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   9.5  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 27.5 bits (58), Expect = 0.047
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 2   ALMLKLALPDESYSAYTIAFGIRNCTHIEKVLEEAYRVLTFPGR 133
           A++L  A PDESY++      +    H +++L   ++ L   GR
Sbjct: 13  AIVLVAARPDESYTSKFDNINVDEILHSDRLLNNYFKCLMDEGR 56


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 27.5 bits (58), Expect = 0.047
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 2   ALMLKLALPDESYSAYTIAFGIRNCTHIEKVLEEAYRVLTFPGR 133
           A++L  A PDESY++      +    H +++L   ++ L   GR
Sbjct: 13  AIVLVAARPDESYTSKFDNINVDEILHSDRLLNNYFKCLMDEGR 56


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 27.5 bits (58), Expect = 0.047
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 2   ALMLKLALPDESYSAYTIAFGIRNCTHIEKVLEEAYRVLTFPGR 133
           A++L  A PDESY++      +    H +++L   ++ L   GR
Sbjct: 13  AIVLVAARPDESYTSKFDNINVDEILHSDRLLNNYFKCLMDEGR 56


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 72  IARILKRSLKRRIACLRSPAGFRLSIGVLRVQSPP 176
           IAR +K  LK        PAG  + IG  ++   P
Sbjct: 417 IAREIKTDLKLASGDYTIPAGCTVVIGTFKLHRQP 451


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 199 YDQYSFQVIPVMGQLVAGQ 255
           YD+YS    P+ G+L  GQ
Sbjct: 143 YDRYSTIARPLDGKLSRGQ 161


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = -1

Query: 234 HHWYHLKRI 208
           HHW+H   I
Sbjct: 471 HHWHHCPEI 479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,787
Number of Sequences: 438
Number of extensions: 2069
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)