Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K11
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    70   2e-13
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    25   4.6  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    25   6.1  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    25   6.1  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 70.1 bits (164), Expect = 2e-13
 Identities = 41/90 (45%), Positives = 54/90 (60%)
 Frame = +3

Query: 135 IHKRLHGVLVSXKALAPRXLSSEIRRFAEKQMGTPDVRVDTRLNKYLWSKGVRNVPFXXX 314
           +HKRL+GV  S K  APR +  EI  FA+K M T +VRVD  LNK +W +G+RNVP    
Sbjct: 21  MHKRLYGV--SFKKRAPRAIK-EIVAFAQKHMQTKEVRVDPSLNKEVWKRGIRNVPHRLR 77

Query: 315 XXXXXXXNDDEDSAHKLFTLVTYVPVASIK 404
                  +D++D A  L+T V  V VA+ K
Sbjct: 78  LRLSRKRSDEDDKA--LYTYVQAVDVANPK 105



 Score = 24.6 bits (51), Expect = 8.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 74  MANQGKEESAYEVVTREYTVNTQTTSRCFGFXESVGTPXXIK 199
           MAN  K+ +  +VVTR+YT++     R +G       P  IK
Sbjct: 1   MANT-KKSAINQVVTRDYTIHMH--KRLYGVSFKKRAPRAIK 39


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 348 DSAHKLFTLVTYVPVASIKGLQTENVDAMPKNYT 449
           D ++K   + +   + +I  LQT N DA PK  T
Sbjct: 401 DPSNKYLAIGSKSGIVNIYDLQTSNADAAPKPVT 434


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +3

Query: 63  STTQWQTKERRNLHMKSLLVNIR*IHKRLHGVLVSXKALAPRXLSSEIRRFAEKQMGTP 239
           S ++ +++  R +  +  LV +  + K   GVLV      P  L S IRR  EK++  P
Sbjct: 236 SRSEGESESSRRIKTE-FLVQMNGVGKDESGVLVLGATNIPWTLDSAIRRRFEKRIYIP 293


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 255 YLLLRLEYPFVFQRISGSHLIXXGVPTL 172
           Y+L     P  FQRI G + I  GV T+
Sbjct: 372 YMLFAYYVPQYFQRIRGDNPIMSGVHTI 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,093,396
Number of Sequences: 5004
Number of extensions: 42110
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)