Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_K11
(485 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X69181-1|CAA48925.1| 121|Homo sapiens ribosomal protein L31 pro... 124 2e-28
X15940-1|CAA34066.1| 125|Homo sapiens protein ( Human mRNA for ... 124 2e-28
BC070373-1|AAH70373.1| 125|Homo sapiens ribosomal protein L31 p... 124 2e-28
BC017343-1|AAH17343.1| 125|Homo sapiens ribosomal protein L31 p... 124 2e-28
AC016738-2|AAY14823.1| 125|Homo sapiens unknown protein. 124 2e-28
AB061830-1|BAB79468.1| 125|Homo sapiens ribosomal protein L31 p... 124 2e-28
BC070210-1|AAH70210.1| 121|Homo sapiens RPL31 protein protein. 112 5e-25
AB007180-1|BAA25839.1| 47|Homo sapiens ribosomal protein L31 p... 55 2e-07
AJ295237-1|CAC16144.1| 450|Homo sapiens neuronal nicotinic acet... 30 5.0
AJ278118-1|CAC20435.1| 450|Homo sapiens neuronal nicotinic acet... 30 5.0
AF327367-1|AAK14333.1| 450|Homo sapiens nicotinic acetylcholine... 30 5.0
AF199235-1|AAG00795.2| 450|Homo sapiens nicotinic acetylcholine... 30 5.0
L34219-1|AAA65123.1| 317|Homo sapiens retinaldehyde-binding pro... 29 8.7
J04213-1|AAA60251.1| 317|Homo sapiens RLBP1 protein. 29 8.7
BC004199-1|AAH04199.1| 317|Homo sapiens retinaldehyde binding p... 29 8.7
>X69181-1|CAA48925.1| 121|Homo sapiens ribosomal protein L31
protein.
Length = 121
Score = 124 bits (298), Expect = 2e-28
Identities = 60/98 (61%), Positives = 72/98 (73%)
Frame = +3
Query: 135 IHKRLHGVLVSXKALAPRXLSSEIRRFAEKQMGTPDVRVDTRLNKYLWSKGVRNVPFXXX 314
IHKR+HGV K APR L EIR+FA K+MGTPDVR+DTRLNK +W+KG+RNVP+
Sbjct: 25 IHKRIHGV--GFKKRAPRALK-EIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIR 81
Query: 315 XXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 428
N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 82 VRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 119
>X15940-1|CAA34066.1| 125|Homo sapiens protein ( Human mRNA for
ribosomal protein L31. ).
Length = 125
Score = 124 bits (298), Expect = 2e-28
Identities = 60/98 (61%), Positives = 72/98 (73%)
Frame = +3
Query: 135 IHKRLHGVLVSXKALAPRXLSSEIRRFAEKQMGTPDVRVDTRLNKYLWSKGVRNVPFXXX 314
IHKR+HGV K APR L EIR+FA K+MGTPDVR+DTRLNK +W+KG+RNVP+
Sbjct: 29 IHKRIHGV--GFKKRAPRALK-EIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIR 85
Query: 315 XXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 428
N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 86 VRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123
>BC070373-1|AAH70373.1| 125|Homo sapiens ribosomal protein L31
protein.
Length = 125
Score = 124 bits (298), Expect = 2e-28
Identities = 60/98 (61%), Positives = 72/98 (73%)
Frame = +3
Query: 135 IHKRLHGVLVSXKALAPRXLSSEIRRFAEKQMGTPDVRVDTRLNKYLWSKGVRNVPFXXX 314
IHKR+HGV K APR L EIR+FA K+MGTPDVR+DTRLNK +W+KG+RNVP+
Sbjct: 29 IHKRIHGV--GFKKRAPRALK-EIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIR 85
Query: 315 XXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 428
N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 86 VRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123
>BC017343-1|AAH17343.1| 125|Homo sapiens ribosomal protein L31
protein.
Length = 125
Score = 124 bits (298), Expect = 2e-28
Identities = 60/98 (61%), Positives = 72/98 (73%)
Frame = +3
Query: 135 IHKRLHGVLVSXKALAPRXLSSEIRRFAEKQMGTPDVRVDTRLNKYLWSKGVRNVPFXXX 314
IHKR+HGV K APR L EIR+FA K+MGTPDVR+DTRLNK +W+KG+RNVP+
Sbjct: 29 IHKRIHGV--GFKKRAPRALK-EIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIR 85
Query: 315 XXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 428
N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 86 VRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123
>AC016738-2|AAY14823.1| 125|Homo sapiens unknown protein.
Length = 125
Score = 124 bits (298), Expect = 2e-28
Identities = 60/98 (61%), Positives = 72/98 (73%)
Frame = +3
Query: 135 IHKRLHGVLVSXKALAPRXLSSEIRRFAEKQMGTPDVRVDTRLNKYLWSKGVRNVPFXXX 314
IHKR+HGV K APR L EIR+FA K+MGTPDVR+DTRLNK +W+KG+RNVP+
Sbjct: 29 IHKRIHGV--GFKKRAPRALK-EIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIR 85
Query: 315 XXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 428
N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 86 VRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123
>AB061830-1|BAB79468.1| 125|Homo sapiens ribosomal protein L31
protein.
Length = 125
Score = 124 bits (298), Expect = 2e-28
Identities = 60/98 (61%), Positives = 72/98 (73%)
Frame = +3
Query: 135 IHKRLHGVLVSXKALAPRXLSSEIRRFAEKQMGTPDVRVDTRLNKYLWSKGVRNVPFXXX 314
IHKR+HGV K APR L EIR+FA K+MGTPDVR+DTRLNK +W+KG+RNVP+
Sbjct: 29 IHKRIHGV--GFKKRAPRALK-EIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIR 85
Query: 315 XXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 428
N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 86 VRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123
>BC070210-1|AAH70210.1| 121|Homo sapiens RPL31 protein protein.
Length = 121
Score = 112 bits (270), Expect = 5e-25
Identities = 54/90 (60%), Positives = 66/90 (73%)
Frame = +3
Query: 135 IHKRLHGVLVSXKALAPRXLSSEIRRFAEKQMGTPDVRVDTRLNKYLWSKGVRNVPFXXX 314
IHKR+HGV K APR L EIR+FA K+MGTPDVR+DTRLNK +W+KG+RNVP+
Sbjct: 29 IHKRIHGV--GFKKRAPRALK-EIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIR 85
Query: 315 XXXXXXXNDDEDSAHKLFTLVTYVPVASIK 404
N+DEDS +KL+TLVTYVPV + K
Sbjct: 86 VRLSRKRNEDEDSPNKLYTLVTYVPVTTFK 115
>AB007180-1|BAA25839.1| 47|Homo sapiens ribosomal protein L31
protein.
Length = 47
Score = 54.8 bits (126), Expect = 2e-07
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = +3
Query: 294 NVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 428
NVP+ N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 1 NVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 45
>AJ295237-1|CAC16144.1| 450|Homo sapiens neuronal nicotinic
acetylcholine receptor subunit4 protein.
Length = 450
Score = 29.9 bits (64), Expect = 5.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 1 AGAPRGGA*HDPRCRIRHEAILRH 72
AG P G H+PRC R EA+L H
Sbjct: 376 AGPPAGPC-HEPRCLCRQEALLHH 398
>AJ278118-1|CAC20435.1| 450|Homo sapiens neuronal nicotinic
acetylcholine alpha10 subunit protein.
Length = 450
Score = 29.9 bits (64), Expect = 5.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 1 AGAPRGGA*HDPRCRIRHEAILRH 72
AG P G H+PRC R EA+L H
Sbjct: 376 AGPPAGPC-HEPRCLCRQEALLHH 398
>AF327367-1|AAK14333.1| 450|Homo sapiens nicotinic acetylcholine
receptor subunit alpha 10 protein.
Length = 450
Score = 29.9 bits (64), Expect = 5.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 1 AGAPRGGA*HDPRCRIRHEAILRH 72
AG P G H+PRC R EA+L H
Sbjct: 376 AGPPAGPC-HEPRCLCRQEALLHH 398
>AF199235-1|AAG00795.2| 450|Homo sapiens nicotinic acetylcholine
receptor subunit alpha 10 protein.
Length = 450
Score = 29.9 bits (64), Expect = 5.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 1 AGAPRGGA*HDPRCRIRHEAILRH 72
AG P G H+PRC R EA+L H
Sbjct: 376 AGPPAGPC-HEPRCLCRQEALLHH 398
>L34219-1|AAA65123.1| 317|Homo sapiens retinaldehyde-binding
protein protein.
Length = 317
Score = 29.1 bits (62), Expect = 8.7
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = -3
Query: 264 LGGYLLLRLEYPFVFQRISGSHL---IXXGVP-TLSLKPKHREVVCVFTV 127
L GY+ RL+YP +F +S + I G P LS + K+ VV +F +
Sbjct: 114 LRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNI 163
>J04213-1|AAA60251.1| 317|Homo sapiens RLBP1 protein.
Length = 317
Score = 29.1 bits (62), Expect = 8.7
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = -3
Query: 264 LGGYLLLRLEYPFVFQRISGSHL---IXXGVP-TLSLKPKHREVVCVFTV 127
L GY+ RL+YP +F +S + I G P LS + K+ VV +F +
Sbjct: 114 LRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNI 163
>BC004199-1|AAH04199.1| 317|Homo sapiens retinaldehyde binding
protein 1 protein.
Length = 317
Score = 29.1 bits (62), Expect = 8.7
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = -3
Query: 264 LGGYLLLRLEYPFVFQRISGSHL---IXXGVP-TLSLKPKHREVVCVFTV 127
L GY+ RL+YP +F +S + I G P LS + K+ VV +F +
Sbjct: 114 LRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNI 163
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,415,229
Number of Sequences: 237096
Number of extensions: 1511229
Number of successful extensions: 2838
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2831
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4384610846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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