Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K11
         (485 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical pr...   103   5e-23
Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical pr...    84   4e-17
U10438-5|AAA19086.1|  395|Caenorhabditis elegans Nuclear hormone...    28   3.1  
AY204168-1|AAO39172.1|  395|Caenorhabditis elegans nuclear recep...    28   3.1  
AC024859-21|AAK29962.4|  490|Caenorhabditis elegans Twik family ...    28   3.1  
AF100304-6|AAP82635.1|  174|Caenorhabditis elegans Gex interacti...    27   7.2  
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ...    27   9.5  
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel...    27   9.5  

>Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical
           protein W09C5.6a protein.
          Length = 122

 Score =  103 bits (248), Expect = 5e-23
 Identities = 50/99 (50%), Positives = 66/99 (66%)
 Frame = +3

Query: 135 IHKRLHGVLVSXKALAPRXLSSEIRRFAEKQMGTPDVRVDTRLNKYLWSKGVRNVPFXXX 314
           IH R+ G+    K  APR +  EI++FA+ QM T DVRVDT+LNK++WSKG++NVP+   
Sbjct: 25  IHARIRGI--GSKKRAPRAID-EIKKFAKIQMKTNDVRVDTKLNKFIWSKGIKNVPYRVR 81

Query: 315 XXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDA 431
                  N+DEDSA KL+TL TYVP  +  GL   NVD+
Sbjct: 82  VRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDS 120


>Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical
           protein W09C5.6b protein.
          Length = 70

 Score = 84.2 bits (199), Expect = 4e-17
 Identities = 37/68 (54%), Positives = 47/68 (69%)
 Frame = +3

Query: 228 MGTPDVRVDTRLNKYLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKG 407
           M T DVRVDT+LNK++WSKG++NVP+          N+DEDSA KL+TL TYVP  +  G
Sbjct: 1   MKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHG 60

Query: 408 LQTENVDA 431
           L   NVD+
Sbjct: 61  LTNVNVDS 68


>U10438-5|AAA19086.1|  395|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 10 protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 230 GYSRRKSRYPPKQISLVKRSQECS 301
           GY++R  RYPP  I  V+ S ECS
Sbjct: 96  GYTKRTRRYPP--IKKVEASDECS 117


>AY204168-1|AAO39172.1|  395|Caenorhabditis elegans nuclear receptor
           NHR-10 protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 230 GYSRRKSRYPPKQISLVKRSQECS 301
           GY++R  RYPP  I  V+ S ECS
Sbjct: 96  GYTKRTRRYPP--IKKVEASDECS 117


>AC024859-21|AAK29962.4|  490|Caenorhabditis elegans Twik family of
           potassium channelsprotein 45, isoform a protein.
          Length = 490

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -3

Query: 315 HEHGMEHS*LL--LTKDICLGGYLLLRLEYP 229
           H+ G+ H  L+  L   ICLGG+L  +LE P
Sbjct: 45  HKFGIRHITLISILAAYICLGGFLFQKLESP 75


>AF100304-6|AAP82635.1|  174|Caenorhabditis elegans Gex interacting
           protein protein4, isoform e protein.
          Length = 174

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 109 FICRFLLSLVCHCVVESPRAEFCS 38
           F+C FL  + C+ V+ S   EFCS
Sbjct: 130 FLCFFLGRISCYSVIFSRNFEFCS 153


>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
           helicase-4 protein.
          Length = 1156

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 371 PCNICARCLHQGFADREC*RHAQELHTNLLSNY 469
           P   C RC  +G    EC    ++L  N L +Y
Sbjct: 663 PTEPCRRCAEEGHWGYECPTRPKDLQGNFLESY 695


>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
           helicase protein 4 protein.
          Length = 1156

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 371 PCNICARCLHQGFADREC*RHAQELHTNLLSNY 469
           P   C RC  +G    EC    ++L  N L +Y
Sbjct: 663 PTEPCRRCAEEGHWGYECPTRPKDLQGNFLESY 695


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,794,630
Number of Sequences: 27780
Number of extensions: 244834
Number of successful extensions: 524
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)