Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K11
         (485 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   5.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   5.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.2  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 79  CHCVVESPRAEFCSGDHVRR 20
           C+C V   R    +GD++RR
Sbjct: 429 CYCPVRFGRKADPNGDYIRR 448


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 392 CLHQGFADREC*RHAQELHTNLLSNYKK 475
           CL   F        A+ L+ +LLSNY +
Sbjct: 7   CLVAPFPGASANSEAKRLYDDLLSNYNR 34


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 434 AQELHTNLLSNYKK 475
           A+ L+ +LLSNY K
Sbjct: 29  AKRLYDDLLSNYNK 42


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 434 AQELHTNLLSNYKK 475
           A+ L+ +LLSNY K
Sbjct: 29  AKRLYDDLLSNYNK 42


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 434 AQELHTNLLSNYKK 475
           A+ L+ +LLSNY K
Sbjct: 25  AKRLYDDLLSNYNK 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,611
Number of Sequences: 438
Number of extensions: 2862
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)