Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_K10
(445 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces... 87 1e-18
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 29 0.32
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 27 1.3
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 1.7
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 26 3.0
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 4.0
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 25 4.0
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 5.2
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 25 5.2
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 25 6.9
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 6.9
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 24 9.1
>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 208
Score = 87.0 bits (206), Expect = 1e-18
Identities = 52/117 (44%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Frame = -2
Query: 432 ARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQL 256
A TIGI VD RRRN+S ESLQ NV+R+K Y A LI+FP K + KG+A + T +
Sbjct: 90 ASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV 149
Query: 255 RGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAAENPD 85
++P+ Q A + A+PITE+ KNF A+ L R+ A+ G RA K AE +
Sbjct: 150 -AAVLPITQEAVEE-AKPITEEAKNFNAFSTLSNERAYARYAGARAAFQKKRAEEAE 204
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 29.1 bits (62), Expect = 0.32
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Frame = -2
Query: 222 PKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAAE----NPDDV-------- 79
P P E+E +YL +S AK VG ++L++A + P+++
Sbjct: 161 PSGAQTPAAEEENVKTLDEYLSERKSAAKPVGRTVEKLENATKVEKSAPEELFASLKKSA 220
Query: 78 TKAPTAVKETKPKK*LL 28
++ +A KE+KPKK LL
Sbjct: 221 SQKKSAAKESKPKKVLL 237
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 1.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 300 KGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDE 187
+ E N ++ + TQ + PV+++ PK + P+T E
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSE 507
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 1.7
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 183 NFKAYQYLRGARSIAKLVGIRAKRLKDAAEN 91
N ++ ++LR A S A++VG +R++ EN
Sbjct: 843 NNRSEEFLRNAASQAEIVGANKERIQKTVEN 873
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 25.8 bits (54), Expect = 3.0
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = -2
Query: 285 EEERKLATQLRG-PLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRL 109
E + +T ++G P+ PV ++A A+ D+ N A G A RAK
Sbjct: 305 EVKESTSTTVQGKPVKPVLKSAAS--AKSTKSDDSNLNANFARLGFGQFAAASNARAKAA 362
Query: 108 KDAAENPDDVTKAPTAVKE 52
A E + APT ++
Sbjct: 363 AKARELKKNEVNAPTYARD 381
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 4.0
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -2
Query: 261 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 157
Q P+ PVQ P A+P ED + + LR
Sbjct: 430 QPSSPVQPVQNVKPAQPAQPSLEDAAKRRVEEMLR 464
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.4 bits (53), Expect = 4.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 444 NPSFARTIGIAVDPRRRNKSVESLQINV 361
NPS A +A D ++S+ES NV
Sbjct: 396 NPSVAAASNVAADQSTEDESIESTSTNV 423
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.0 bits (52), Expect = 5.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 347 NIELVLFFSRRARRY*RVKLMKKSANWLL 261
N+E+ + F+ R+ R+ L KKS N LL
Sbjct: 1502 NMEMWIKFANLCRKSGRISLAKKSLNLLL 1530
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 25.0 bits (52), Expect = 5.2
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -3
Query: 179 SKLINTLEELVLLPNLWA 126
SKLI TL+E VL+ LWA
Sbjct: 254 SKLIYTLDEDVLVDALWA 271
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 24.6 bits (51), Expect = 6.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 142 NRTSSSKVLISFEVLLILSDGSSNRFWCCLLYWHQGTTQLS 264
N +S K+L +EVLL G F+ + +GT LS
Sbjct: 296 NECTSHKLLFPYEVLLDKDGGIVAEFYSTIALTKKGTIILS 336
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 24.6 bits (51), Expect = 6.9
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -2
Query: 300 KGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGAR 148
+GE + R + + R V++T P++ PI ++ KN ++L AR
Sbjct: 473 RGEPAVQTRNHSKRTRTATSSVEETTPRAFNVPIAQN-KNPSELEFLEHAR 522
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 24.2 bits (50), Expect = 9.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 275 ANWLLSCVVP*CQYNRQHQNLLLDPSLRMRRTSKL 171
+NW +S +V C Y+ + Q +D R TS L
Sbjct: 1663 SNWAISILVFLCAYSNEQQTQAVDEIRREVLTSVL 1697
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,738,669
Number of Sequences: 5004
Number of extensions: 31953
Number of successful extensions: 112
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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