Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_K10
(445 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 102 1e-22
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 99 8e-22
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331... 28 2.9
10_08_0694 - 19929918-19930292,19930633-19930866 28 2.9
12_01_0079 + 644754-645932,645966-646061,646193-647122 27 5.1
11_01_0078 + 609005-610183,610217-610312,610444-611373 27 5.1
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 27 5.1
02_05_0023 + 25138709-25138823,25139013-25139197,25139268-251393... 27 6.8
06_03_1379 - 29709532-29709843,29709951-29710112,29710193-297110... 27 9.0
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 102 bits (244), Expect = 1e-22
Identities = 54/114 (47%), Positives = 76/114 (66%), Gaps = 2/114 (1%)
Frame = -2
Query: 435 FARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQ 259
FA TIGI+VD RR+N+S+E LQ NVQRLK Y+A+L++FP + +KV G++ EE ATQ
Sbjct: 89 FAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQ 148
Query: 258 LRGPLMPVQQTAPKSV-ARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDA 100
++G MP+ + +SV +T+D K FKAY LR R + +G R KR +A
Sbjct: 149 VQGDYMPITRGEKRSVEVVKVTDDMKAFKAYAKLRVERMNQRHIGARQKRAAEA 202
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 99 bits (238), Expect = 8e-22
Identities = 53/114 (46%), Positives = 76/114 (66%), Gaps = 2/114 (1%)
Frame = -2
Query: 435 FARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQ 259
+A TIGI+VD RR+N+S+E LQ NVQRLK Y+A+L++FP + +KV G++ EE ATQ
Sbjct: 89 YAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTAEELATATQ 148
Query: 258 LRGPLMPVQQTAPKSV-ARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDA 100
++G MP+ + +SV +T++ K FKAY LR R + VG R KR +A
Sbjct: 149 VQGDYMPIARGEKRSVEVVKVTDEMKAFKAYAKLRVERMNQRHVGARQKRAAEA 202
>11_01_0432 +
3313060-3313107,3313610-3313753,3314510-3314662,
3315283-3315792,3315888-3317423,3317505-3317573,
3317742-3317807,3318517-3318640,3319464-3319690
Length = 958
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 112 SLGSDAHKFGNRTSSSKVLISFEVLLILS 198
S ++HK N+T SS+ L+SF+ +L+L+
Sbjct: 575 STSVESHKQANKTESSQGLLSFQDVLLLT 603
>10_08_0694 - 19929918-19930292,19930633-19930866
Length = 202
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = -2
Query: 399 RRNKSVESLQINVQRLKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAP 220
R N + + + + K LI+ P G +VL+G E++ K A ++ L +++
Sbjct: 54 RSNPVHKKIPVLLHHGKPIAESLIIIPPGIRVLRGSVEEDKDKAAGEMSTALQHLEEAFV 113
Query: 219 K 217
K
Sbjct: 114 K 114
>12_01_0079 + 644754-645932,645966-646061,646193-647122
Length = 734
Score = 27.5 bits (58), Expect = 5.1
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = -2
Query: 237 VQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTKAPTAV 58
V++ K+ + + EK + + +AKLV R +RL+D ++ +K T V
Sbjct: 211 VEKAKRKAEEKRLARLEKEMLEEEERKQREEMAKLVEER-RRLRDEKAEAEERSKGATPV 269
Query: 57 KETKPKK 37
E P+K
Sbjct: 270 GEKDPRK 276
>11_01_0078 + 609005-610183,610217-610312,610444-611373
Length = 734
Score = 27.5 bits (58), Expect = 5.1
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = -2
Query: 237 VQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTKAPTAV 58
V++ K+ + + EK + + +AKLV R +RL+D ++ +K T V
Sbjct: 211 VEKAKRKAEEKRLARLEKEMLEEEERKQREEMAKLVEER-RRLRDEKAEAEERSKGATPV 269
Query: 57 KETKPKK 37
E P+K
Sbjct: 270 GEKDPRK 276
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 384 VESLQINVQRLKEYRARLILFPKGKKVLKGEANEEERKLATQL 256
++SL+ VQR+ E R R +L P G ++E R A +
Sbjct: 182 IQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERRLSALNI 224
>02_05_0023 +
25138709-25138823,25139013-25139197,25139268-25139335,
25139729-25140041,25140621-25140962,25140990-25141079
Length = 370
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Frame = +2
Query: 41 FGLVSFTAVGALVTSSGFSAASF---SRLARMPTSLAIE 148
FGL++ T++G L S GF++ F ++LA +P ++ +E
Sbjct: 76 FGLLNGTSIGLLNLSLGFNSIGFYQMTKLAIIPFTVMLE 114
>06_03_1379 -
29709532-29709843,29709951-29710112,29710193-29711086,
29712741-29712812,29714106-29714210,29714820-29714900
Length = 541
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -3
Query: 176 KLINTLEELVLLPNLWASEPSD*RMRQKILMMSLKHL 66
+++N L ++ ++W+S+ R I+ M+LKHL
Sbjct: 366 EVLNLLVDICTKQSVWSSQVHTLTARPTIMFMNLKHL 402
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,041,914
Number of Sequences: 37544
Number of extensions: 200634
Number of successful extensions: 575
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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