Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K10
         (445 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.28 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   3.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   4.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   4.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.28
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -2

Query: 189 EKNFKAY-QYLRGARSIAKLVGI--RAKRLKDAAENPDDVTK--APTAVKETKPKK 37
           E  F+ Y Q L+G     K VG   R K L    + P +V K  +P + KET PKK
Sbjct: 739 ESEFEMYHQQLQGVAKNKKNVGSMSRNKALLPVIK-PANVNKEQSPNSTKETTPKK 793


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 91  IFCRILQSLGSDAHKFGNRTSSSKVLISFEVLLILSD 201
           +FC + +   S AH+  N+ + S + + F + L   D
Sbjct: 236 LFCGLQKYTRSFAHQSINKEARSNLYLPFHLTLSFRD 272


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 91  IFCRILQSLGSDAHKFGNRTSSSKVLISFEVLLILSD 201
           +FC + +   S AH+  N+ + S + + F + L   D
Sbjct: 231 LFCGLQKYTRSFAHQSINKEARSNLYLPFHLTLSFRD 267


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 38  FFGLVSFTAVG 70
           FFGLVS TA+G
Sbjct: 315 FFGLVSDTALG 325


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 255 RGPLMPVQQTAPKSVA 208
           RG  +PV+ TAP+++A
Sbjct: 796 RGGKIPVRWTAPEAIA 811


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 381 ESLQINVQRLKEYRARLILFPKGKKVLKGE 292
           +S +IN++R+K+   +L  +      LKGE
Sbjct: 492 KSSRINIERMKQVYQQLNKYRGNGVSLKGE 521


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,747
Number of Sequences: 438
Number of extensions: 2144
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)