Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K09
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   2.7  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.6  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    25   6.3  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   6.3  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    25   8.3  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    25   8.3  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   8.3  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 258  GVFQQLYLRTSTSRHSLFTILDHFVT*HLMIL 353
            G+F+ L      +R +  + +DH++  H M+L
Sbjct: 1107 GIFESLCSENENTRSNALSCIDHYLNAHKMLL 1138


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 217 CPLLTKACHPNTQKVYFSSF 276
           CP   + CHP  Q+ +F SF
Sbjct: 3   CPSPLRECHPFLQRSFFPSF 22


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 207 FRIMSTLNESLPPKYPKGVFQQLYLRTSTSRHSLFTILDHFV 332
           F +  ++    PPK+P  ++ QLY    +   S + + D  V
Sbjct: 159 FCVTCSIKSHHPPKHPLSIWSQLYDWIDSQNPSQYRLPDDLV 200


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -1

Query: 254 WVFGWQAFVKSGHYSKMSNQHAKVSWQC 171
           WV  W    K   Y   S+  AK  W+C
Sbjct: 13  WVAQWDERYKCYFYVNESDPKAKPQWEC 40


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 236 PATQIPKRCISAALLENQYV*A*FVYHPGPLRDLTSNDIVLK 361
           P  ++PK  +   LLEN Y       HP P + L +  I  K
Sbjct: 334 PRHRLPKLNVKTGLLENSYTEFSLNEHPLPKKTLLTISIFEK 375


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +3

Query: 204 HFRIMSTLNESLPPKYPKGVFQQLYLRTSTSRHSLFTILDHFVT*HLMILCSK 362
           H   +ST    LPP   K VFQQ        RH+L++ L+       MI  SK
Sbjct: 303 HSLDISTHTFKLPPLMSKEVFQQF---LQWVRHTLWSCLEEGEDEEFMIYRSK 352


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 106 HRFSTALPTTPSSLLDRTT 50
           H  +++LP TPSS L  TT
Sbjct: 475 HSSASSLPITPSSYLSNTT 493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,135,525
Number of Sequences: 5004
Number of extensions: 45257
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)