Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K09
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276590-1|CAB91651.1|  679|Caenorhabditis elegans LET-413 prote...    31   0.35 
AF068716-10|AAC17752.2|  679|Caenorhabditis elegans Lethal prote...    31   0.35 
AF068716-9|AAT81195.1|  699|Caenorhabditis elegans Lethal protei...    31   0.35 
AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical ...    28   4.3  
Z92834-3|CAB07384.1|  328|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AC024790-1|AAK84609.1|  315|Caenorhabditis elegans Hypothetical ...    27   5.7  
Z54236-2|CAE46661.1|  313|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z54236-1|CAA90979.2|  312|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF321546-1|AAG42102.1|  312|Caenorhabditis elegans suppressor of...    27   9.9  

>AJ276590-1|CAB91651.1|  679|Caenorhabditis elegans LET-413 protein
           protein.
          Length = 679

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 226 RVDIIRKCPTNMQRFPGNVFRYRKLRVILELYRWVIYLSHHRFS 95
           +VD I +  +N+Q  P ++FR+RKL  +      +  L H  FS
Sbjct: 14  QVDSIDRSQSNLQAIPSDIFRFRKLEDLNLTMNNIKELDHRLFS 57


>AF068716-10|AAC17752.2|  679|Caenorhabditis elegans Lethal protein
           413, isoform a protein.
          Length = 679

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 226 RVDIIRKCPTNMQRFPGNVFRYRKLRVILELYRWVIYLSHHRFS 95
           +VD I +  +N+Q  P ++FR+RKL  +      +  L H  FS
Sbjct: 14  QVDSIDRSQSNLQAIPSDIFRFRKLEDLNLTMNNIKELDHRLFS 57


>AF068716-9|AAT81195.1|  699|Caenorhabditis elegans Lethal protein
           413, isoform b protein.
          Length = 699

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 226 RVDIIRKCPTNMQRFPGNVFRYRKLRVILELYRWVIYLSHHRFS 95
           +VD I +  +N+Q  P ++FR+RKL  +      +  L H  FS
Sbjct: 14  QVDSIDRSQSNLQAIPSDIFRFRKLEDLNLTMNNIKELDHRLFS 57


>AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical
            protein Y45G5AM.2 protein.
          Length = 1061

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -1

Query: 251  VFGWQAFV--KSGHYSKMSNQHAKVSWQCFSLSEAQGDFRVV*VGYISKPSSLLDRTTNY 78
            VF +Q F+     HY+  +   A+  W  +   E    + +V  G+I   S+   +T  Y
Sbjct: 848  VFHYQQFMFQTGSHYTDGATNCARTIWDSYPTEEFMNQYTLVLKGHIRLASASFPKTLTY 907


>Z92834-3|CAB07384.1|  328|Caenorhabditis elegans Hypothetical
           protein F39B2.3 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 329 EVVQDGKQTMPRRTGSQVKLLKYTFWVFGWQAFVKSGHYSKMSN 198
           +V++  +  MPR   +QV +  Y   V     ++++G Y K+ N
Sbjct: 22  DVIEAVESDMPRLEKNQVLVRNYAAGVNPVDTYIRAGQYGKLPN 65


>AC024790-1|AAK84609.1|  315|Caenorhabditis elegans Hypothetical
           protein Y47D7A.3 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +3

Query: 111 LRYITHLYNSKITL---SFR*RKTLPGNLCMLVGHFRIMSTLNESLPPKYPKGVFQQL 275
           +R I   +  KI L    F+ +K +P N+C+   H       ++ LPPK P    Q L
Sbjct: 169 MRGIVFFFKQKINLFTKKFKNQKKIPSNMCLTRNH------SSDPLPPKMPHASTQIL 220


>Z54236-2|CAE46661.1|  313|Caenorhabditis elegans Hypothetical
           protein C27B7.1b protein.
          Length = 313

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 196 NMQRFPGNVFRYRKLRVILELYRWVIYLSHHRFSTALPTTPSSLL 62
           N +R P    R +KL   ++ +    +L+HH  STA+P     LL
Sbjct: 60  NQKRLPIYEKR-KKLTTKIDNFWQTAFLNHHLLSTAIPEEQEDLL 103


>Z54236-1|CAA90979.2|  312|Caenorhabditis elegans Hypothetical
           protein C27B7.1a protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 196 NMQRFPGNVFRYRKLRVILELYRWVIYLSHHRFSTALPTTPSSLL 62
           N +R P    R +KL   ++ +    +L+HH  STA+P     LL
Sbjct: 60  NQKRLPIYEKR-KKLTTKIDNFWQTAFLNHHLLSTAIPEEQEDLL 103


>AF321546-1|AAG42102.1|  312|Caenorhabditis elegans suppressor of
           presenilin 2 protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 196 NMQRFPGNVFRYRKLRVILELYRWVIYLSHHRFSTALPTTPSSLL 62
           N +R P    R +KL   ++ +    +L+HH  STA+P     LL
Sbjct: 60  NQKRLPIYEKR-KKLTTKIDNFWQTAFLNHHLLSTAIPEEQEDLL 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,604,205
Number of Sequences: 27780
Number of extensions: 244209
Number of successful extensions: 518
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)