Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K09
         (494 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   0.44 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.44 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   0.44 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.4  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   9.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   9.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.5  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   9.5  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 232 SLRVDIIRKCPTNMQRFP 179
           S+R+ I   CP N+Q FP
Sbjct: 129 SIRLTITASCPMNLQYFP 146


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 232 SLRVDIIRKCPTNMQRFP 179
           S+R+ I   CP N+Q FP
Sbjct: 129 SIRLTITASCPMNLQYFP 146


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 232 SLRVDIIRKCPTNMQRFP 179
           S+R+ I   CP N+Q FP
Sbjct: 68  SIRLTITASCPMNLQYFP 85


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 232 SLRVDIIRKCPTNMQRFP 179
           S+R+ I  KCP  ++ FP
Sbjct: 153 SMRLTIKAKCPMELRNFP 170


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -2

Query: 250 YLGGRL--SLRVDIIRKCPTNMQRFP 179
           Y  GR+  S R+ I   CP N++ FP
Sbjct: 113 YQDGRVLYSSRLTIKAGCPMNLENFP 138


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -2

Query: 205 CPTNMQRFPGNVFRYRKLRVILELYRWVIYLSHHRFSTALPTT 77
           CPT   +      RYR  R I+E     +   ++ F+   P T
Sbjct: 261 CPTRNVKEMIRCLRYRPARAIVETLANFMRFYYNPFTPFGPVT 303


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = -1

Query: 245 GWQAFVKSGHYSKMSNQHAKVSWQCFSLSEAQGDFR 138
           GW+      H++     + K  +    L+  QG+FR
Sbjct: 218 GWRKLRNIVHWTPFFQTYKKQRYPWVQLAGHQGNFR 253


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = -1

Query: 245 GWQAFVKSGHYSKMSNQHAKVSWQCFSLSEAQGDFR 138
           GW+      H++     + K  +    L+  QG+FR
Sbjct: 133 GWRKLRNIVHWTPFFQTYKKQRYPWVQLAGHQGNFR 168


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = -1

Query: 245 GWQAFVKSGHYSKMSNQHAKVSWQCFSLSEAQGDFR 138
           GW+      H++     + K  +    L+  QG+FR
Sbjct: 452 GWRKLRNIVHWTPFFQTYKKQRYPWVQLAGHQGNFR 487


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -2

Query: 205 CPTNMQRFPGNVFRYRKLRVILELYRWVIYLSHHRFSTALPTT 77
           CPT   +      RYR  R I+E     +   ++ F+   P T
Sbjct: 261 CPTRNVKEMIRCLRYRPARAIVETLANFMRFYYNPFTPFGPVT 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,851
Number of Sequences: 438
Number of extensions: 3090
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)