Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K08
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical ...    30   0.72 
AF025456-1|AAB70959.3|  438|Caenorhabditis elegans Hypothetical ...    27   5.1  
AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock tr...    27   8.9  
AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock tr...    27   8.9  
AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical
           protein Y62F5A.10 protein.
          Length = 437

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
 Frame = +1

Query: 79  EKIPITVITVCKLKHKYDYIDPCTRKSFLYR-------RRSSK*QVTVSNYTAASVPNGF 237
           E++ +  + V     KYD+  P T  SFLY        R+  K     S YT   +PNGF
Sbjct: 236 EQVVMMYVLVGSEDEKYDFF-PKTTGSFLYYGEMFVNVRKVEKMDEERSRYTIEVLPNGF 294

Query: 238 NTIHYI*VILYTGF 279
           +    + V ++TG+
Sbjct: 295 SNSVMMNVYVHTGW 308


>AF025456-1|AAB70959.3|  438|Caenorhabditis elegans Hypothetical
           protein C46F9.4 protein.
          Length = 438

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 416 IHYFEQISNLCHGQQHSMQSTLRRIFPDKLCVYK 315
           +H F  IS L +G+++      R   P +LC++K
Sbjct: 9   VHTFNDISKLGNGKRYYSDIEKRHNIPWRLCIFK 42


>AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 290 LINKLKVLLYTRIVYLGIFSVT-CFALSAAGRDINSKFAQNNESQGPLRNSC 442
           L++ ++  L  R+   G+  +  C A   AG   NSK A+ N  +GP ++ C
Sbjct: 269 LVSVMQPGLSKRVAKRGVLEIDFCAANGTAGP--NSKRARMNSEEGPYKDVC 318


>AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 290 LINKLKVLLYTRIVYLGIFSVT-CFALSAAGRDINSKFAQNNESQGPLRNSC 442
           L++ ++  L  R+   G+  +  C A   AG   NSK A+ N  +GP ++ C
Sbjct: 269 LVSVMQPGLSKRVAKRGVLEIDFCAANGTAGP--NSKRARMNSEEGPYKDVC 318


>AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical
           protein Y53C10A.12 protein.
          Length = 671

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 290 LINKLKVLLYTRIVYLGIFSVT-CFALSAAGRDINSKFAQNNESQGPLRNSC 442
           L++ ++  L  R+   G+  +  C A   AG   NSK A+ N  +GP ++ C
Sbjct: 269 LVSVMQPGLSKRVAKRGVLEIDFCAANGTAGP--NSKRARMNSEEGPYKDVC 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,480,640
Number of Sequences: 27780
Number of extensions: 204632
Number of successful extensions: 396
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)