Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_K07
(531 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 111 8e-26
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces... 27 1.7
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.7
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 2.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 5.3
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 25 7.0
SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce... 25 7.0
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 25 9.3
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo... 25 9.3
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 111 bits (266), Expect = 8e-26
Identities = 53/111 (47%), Positives = 78/111 (70%), Gaps = 2/111 (1%)
Frame = +1
Query: 25 KILKAGAIEPDTFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 198
KI+K + +P + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 199 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKR 351
P LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV K+ R
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVTQKRPR 116
Score = 33.1 bits (72), Expect = 0.027
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 438 EIVGKRIRVKLDGSQLIKVHLDKNQQTTIEH 530
EI+GKR R DG + IKV LD T+++
Sbjct: 136 EIIGKRTRQATDGRKTIKVFLDNRDANTVDY 166
>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 118
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +1
Query: 55 DTFETSISQALVELETNSDLKAQLRELYITKAKEIEL 165
+T+E I + L++L + S++ Q+ ++I E+E+
Sbjct: 78 ETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEV 114
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +1
Query: 31 LKAGA-IEPDTFETSISQALVE--LETNSDLKAQLRELY 138
+KA A I+PD FE +I Q L + N LK ++ +LY
Sbjct: 2123 VKANAFIDPDNFEVNIEQTLSKNFFGNNQYLKLKIMQLY 2161
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 187 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 279
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 28 ILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIEL 165
I + G + +TF+ +SQA ++ + L +RE ++ E +L
Sbjct: 3170 ISRLGVVSKNTFQLPMSQANIQRFAENVLPVSVREAFLRDFVETKL 3215
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 25.0 bits (52), Expect = 7.0
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = +2
Query: 383 SWYXLTXXYWGTILVFPCRDCWQTHQSEARWLTTHQSASRQKPTDN 520
SW L W +L DCW H L+ S +PTD+
Sbjct: 101 SWKDLPSANWMEML-----DCWSCHTDYPTVLSKRGGPSMFQPTDD 141
>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 428 FPCRDCWQTHQSEARWLTTHQSASRQ 505
F CR C TH +E +LT Q Q
Sbjct: 54 FECRLCLTTHANENSYLTHTQGKKHQ 79
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 24.6 bits (51), Expect = 9.3
Identities = 27/105 (25%), Positives = 47/105 (44%)
Frame = +1
Query: 10 FKMSTKILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIII 189
FK STK+L A + D+ E VE+E ++K RE Y T + + +
Sbjct: 275 FKTSTKLLSA-KVNGDSVE-------VEIE---NMKNNKRETYQTDVLLVAI-GRVPYTE 322
Query: 190 YVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHK 324
+ + KL R++ + E + + H+ +GD + P +HK
Sbjct: 323 GLGLDKLGISMDKSNRVIMDSEYRTNIPHIRVIGDATLGPMLAHK 367
>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 325
Score = 24.6 bits (51), Expect = 9.3
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 31 LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIE 162
L A+E T E + V + S LKA +++ + K E++
Sbjct: 92 LLKSAVETITLENGLRNRRVNVTKKSTLKASVKKSTLKKKNEVD 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,130
Number of Sequences: 5004
Number of extensions: 41981
Number of successful extensions: 115
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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