Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_K07
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 99 1e-21
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 85 4e-17
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 54 5e-08
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 30 1.0
03_02_0846 + 11712530-11712740,11713974-11714055,11714127-117142... 29 1.8
10_02_0181 + 6348677-6348946,6348963-6349176,6351048-6351413,635... 29 3.1
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 3.1
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 3.1
04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230... 28 4.1
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 5.4
02_01_0293 + 1955439-1956457,1957002-1957322,1957405-1957411,195... 28 5.4
07_03_0700 + 20797600-20798064 27 7.1
06_01_0793 - 5918912-5919793,5919830-5920285 27 9.4
01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872 27 9.4
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 99 bits (238), Expect = 1e-21
Identities = 51/111 (45%), Positives = 75/111 (67%), Gaps = 2/111 (1%)
Frame = +1
Query: 25 KILKAGAIEPDTFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 198
KI K +EP FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 199 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKR 351
KAF+KI +RLVRELEKKFSGK VV V R+I+ P + V + R
Sbjct: 67 YRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAVQRPRTR 117
Score = 40.7 bits (91), Expect = 7e-04
Identities = 17/32 (53%), Positives = 25/32 (78%)
Frame = +3
Query: 435 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEH 530
AEIVGKRIR +LDG+++IK+ LD ++ E+
Sbjct: 134 AEIVGKRIRYRLDGAKVIKIFLDPKERNNTEY 165
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 84.6 bits (200), Expect = 4e-17
Identities = 45/93 (48%), Positives = 63/93 (67%), Gaps = 2/93 (2%)
Frame = +1
Query: 79 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 252
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 253 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKR 351
EKKFSGK VV V R+I+ P + V + R
Sbjct: 98 EKKFSGKDVVLVATRRIVRPPKKGSAVVRPRTR 130
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 435 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEH 530
AEIVGKR+R LDG +++K+ LD ++ E+
Sbjct: 147 AEIVGKRVRYHLDGRKIMKIFLDPKERNNTEY 178
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 54.4 bits (125), Expect = 5e-08
Identities = 29/64 (45%), Positives = 43/64 (67%)
Frame = +1
Query: 133 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 312
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKKFSGK VVF R+I+ +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88
Query: 313 PSHK 324
P +K
Sbjct: 89 PLNK 92
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -2
Query: 347 FCLLATRVLWLGLGRILRSPTNTTCLPLNFFSNSRTSLI 231
F L A+ L L L +L T+ CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>03_02_0846 +
11712530-11712740,11713974-11714055,11714127-11714226,
11714311-11714406,11714492-11714542,11714685-11714750,
11715413-11715514,11716099-11716167,11716251-11716334,
11716531-11716626,11717216-11717268,11718808-11718945,
11719003-11719435
Length = 526
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +1
Query: 205 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPQFPGNXXEPF 384
K + F+ ++ + L +KFS H VF+G ++ P S +T + +F N +P
Sbjct: 74 KPELFEGLRFDFTKGLNQKFSLSHSVFMGSLEV-PSQSTET-IKVPTSHYEFGANFIDPK 131
Query: 385 LVL 393
L+L
Sbjct: 132 LIL 134
>10_02_0181 +
6348677-6348946,6348963-6349176,6351048-6351413,
6351607-6351728,6351767-6352093
Length = 432
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/61 (29%), Positives = 24/61 (39%)
Frame = -3
Query: 475 PSSFTLMRLPTISAREYQDRSPIXGRQXVPRTVQXXSLGTGAFSVCWLHVSCGWAWAGSY 296
P + L+ +P + Q P RQ VPR G F + + C WAG Y
Sbjct: 8 PLALALVAIPITILLDLQSDPP---RQAVPRAPGVA--GGNLFDITLVRCRCFMEWAGKY 62
Query: 295 G 293
G
Sbjct: 63 G 63
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +1
Query: 85 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 219
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +1
Query: 85 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 219
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>04_04_0378 -
24822436-24822521,24822623-24822738,24823010-24823092,
24823772-24823918,24824004-24824051,24824153-24824353,
24824981-24825152,24825235-24825299,24825813-24825939,
24826436-24826528,24826608-24826696,24826804-24826950,
24827047-24827359,24827474-24828048
Length = 753
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 25 KILKAGAIEPDTFET--SISQALVELETNSDLKAQLRELYITKAKEIELHN 171
K LK +E D E ISQAL L + S + + +E KEIEL+N
Sbjct: 565 KELKKAKVEHDRKEQLCDISQALAVLASASSVAKERQEFLNLVNKEIELYN 615
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +1
Query: 85 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 219
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
>02_01_0293 +
1955439-1956457,1957002-1957322,1957405-1957411,
1957954-1958041,1958143-1958324,1958508-1958644,
1958790-1958856,1959132-1959246,1959390-1959501,
1960420-1960495,1960576-1960758,1961166-1961326,
1961463-1961532,1962721-1962928,1963015-1963304,
1963388-1963509,1963605-1963749,1964040-1964113,
1964464-1964911
Length = 1274
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 361 GTGAFSVCWLHVSCGWAWAGSYG 293
G G +CW+H + GW A +G
Sbjct: 147 GGGVQDLCWIHHASGWLLASIHG 169
>07_03_0700 + 20797600-20798064
Length = 154
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 368 FPGNWGLFCLLATRVLWLGLG 306
FPG WG FCL + +W G
Sbjct: 79 FPGIWGPFCLGLWKTIWRRAG 99
>06_01_0793 - 5918912-5919793,5919830-5920285
Length = 445
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 233 SGLSVS*KRSSAVSMLCSLVTVRSCP 310
SG+SV+ KR S C+L +RSCP
Sbjct: 166 SGMSVA-KRCSLAMERCTLAAMRSCP 190
>01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872
Length = 91
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 82 ALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY 192
A++E+E N DL + L T+ E H + S++IY
Sbjct: 2 AILEIEDNDDLLSLPGSLANTRIGESPSHQRDSLLIY 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,121,468
Number of Sequences: 37544
Number of extensions: 282125
Number of successful extensions: 728
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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