Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_K07
(531 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical pr... 122 1e-28
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass... 29 1.6
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 29 1.6
Z77652-2|CAB01113.1| 665|Caenorhabditis elegans Hypothetical pr... 29 2.7
U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast... 28 3.6
U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast... 28 3.6
U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast... 28 3.6
U52000-2|AAK68677.1| 529|Caenorhabditis elegans Vang (van gogh/... 28 4.8
U52000-1|AAA96091.1| 532|Caenorhabditis elegans Vang (van gogh/... 28 4.8
Z48582-3|CAA88464.1| 401|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 27 6.3
U42842-2|AAA83592.3| 341|Caenorhabditis elegans Hypothetical pr... 27 8.4
AC087078-1|AAG37943.1| 198|Caenorhabditis elegans Hypothetical ... 27 8.4
>Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical
protein ZC434.2 protein.
Length = 194
Score = 122 bits (295), Expect = 1e-28
Identities = 59/112 (52%), Positives = 80/112 (71%), Gaps = 1/112 (0%)
Frame = +1
Query: 25 KILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 204
K+LK+ E +SQAL++LETN D+++QL+ELYI KE+EL NK +IIIYVP+P
Sbjct: 7 KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66
Query: 205 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRV-ANKQKRPQ 357
+LKAF KI LVRELEKKF G+ ++ + R+ILPKP ++ KQKRP+
Sbjct: 67 QLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPR 118
Score = 50.8 bits (116), Expect = 6e-07
Identities = 21/32 (65%), Positives = 27/32 (84%)
Frame = +3
Query: 435 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEH 530
AE+VG+RIRVKLDG ++ KVHLDK+ QT + H
Sbjct: 137 AEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGH 168
>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform e protein.
Length = 2702
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -3
Query: 478 EPSSFTLMRLPTISAREYQDRSPIXGRQXVPRTVQXXSLG 359
EP+SFT ++ ++SA QD S + ++ + + +Q + G
Sbjct: 1352 EPTSFTTIQTSSVSASVSQDMSRLGEKEAIKKVLQNSNKG 1391
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -3
Query: 478 EPSSFTLMRLPTISAREYQDRSPIXGRQXVPRTVQXXSLG 359
EP+SFT ++ ++SA QD S + ++ + + +Q + G
Sbjct: 6198 EPTSFTTIQTSSVSASVSQDMSRLGEKEAIKKVLQNSNKG 6237
>Z77652-2|CAB01113.1| 665|Caenorhabditis elegans Hypothetical
protein C06B3.2 protein.
Length = 665
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 352 AFSVCWLHVSCGWAWAGSYGH 290
A SV W+ +SC + WAG G+
Sbjct: 572 ALSVLWIILSCHYGWAGPIGN 592
>U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform c protein.
Length = 317
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 446 WQTHQSEARWLTTHQSASRQKPTDNY 523
W+ H+SE WLT Q ++ T NY
Sbjct: 171 WRFHKSEQVWLTRSQYGGVKEQTGNY 196
>U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform b protein.
Length = 367
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 446 WQTHQSEARWLTTHQSASRQKPTDNY 523
W+ H+SE WLT Q ++ T NY
Sbjct: 221 WRFHKSEQVWLTRSQYGGVKEQTGNY 246
>U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform a protein.
Length = 444
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 446 WQTHQSEARWLTTHQSASRQKPTDNY 523
W+ H+SE WLT Q ++ T NY
Sbjct: 298 WRFHKSEQVWLTRSQYGGVKEQTGNY 323
>U52000-2|AAK68677.1| 529|Caenorhabditis elegans Vang (van
gogh/strabismus planarpolarity protein) homolog protein
1, isoform b protein.
Length = 529
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -1
Query: 84 SLRDRSLEGVGFYSTRFEDFRTHLESS 4
S+++ + E + FY+TRF F HL+++
Sbjct: 263 SIQEAATEILRFYTTRFSSFNIHLDNA 289
>U52000-1|AAA96091.1| 532|Caenorhabditis elegans Vang (van
gogh/strabismus planarpolarity protein) homolog protein
1, isoform a protein.
Length = 532
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -1
Query: 84 SLRDRSLEGVGFYSTRFEDFRTHLESS 4
S+++ + E + FY+TRF F HL+++
Sbjct: 266 SIQEAATEILRFYTTRFSSFNIHLDNA 292
>Z48582-3|CAA88464.1| 401|Caenorhabditis elegans Hypothetical
protein F27E5.1 protein.
Length = 401
Score = 27.5 bits (58), Expect = 6.3
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 52 PDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY--VPMPKLKAFQK 225
PD ++ + S+ ++ + N DL + R I KA + E+H ++ Y +P + A++
Sbjct: 39 PDIYDPAQSEKVLWFDVNLDLPPRQRFQQIAKAYKKEIHAVFDVLNYFLTIIPGVNAWEL 98
Query: 226 IQIRLVRELEK 258
I L+K
Sbjct: 99 IGNMTASALDK 109
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 6.3
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = +1
Query: 31 LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 210
LK A P++ TSI Q L+ ++ + + E ++ +K+IE+H + +
Sbjct: 2204 LKYTASTPES--TSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDY 2261
Query: 211 KAFQKIQIRLVRELEKKFSGKHVVFV 288
+ QK ++LV K F+
Sbjct: 2262 EKTQKYDLKLVATSSGKQVSSEAEFI 2287
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 6.3
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = +1
Query: 31 LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 210
LK A P++ TSI Q L+ ++ + + E ++ +K+IE+H + +
Sbjct: 2204 LKYTASTPES--TSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDY 2261
Query: 211 KAFQKIQIRLVRELEKKFSGKHVVFV 288
+ QK ++LV K F+
Sbjct: 2262 EKTQKYDLKLVATSSGKQVSSEAEFI 2287
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 6.3
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = +1
Query: 31 LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 210
LK A P++ TSI Q L+ ++ + + E ++ +K+IE+H + +
Sbjct: 2204 LKYTASTPES--TSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDY 2261
Query: 211 KAFQKIQIRLVRELEKKFSGKHVVFV 288
+ QK ++LV K F+
Sbjct: 2262 EKTQKYDLKLVATSSGKQVSSEAEFI 2287
>U42842-2|AAA83592.3| 341|Caenorhabditis elegans Hypothetical
protein EGAP2.1 protein.
Length = 341
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +2
Query: 341 NRKGPSSQGTXLNRSWYXLTXXYWGTI---LVFPCRDCWQTHQSEARWLTTH 487
+++G S + SW+ T + TI L+ C++C +H + L+TH
Sbjct: 119 DKRGDCSSCSIKFGSWFEYTKLSFKTIFSFLIMHCKNCSTSHMANELKLSTH 170
>AC087078-1|AAG37943.1| 198|Caenorhabditis elegans Hypothetical
protein Y34F4.2 protein.
Length = 198
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -1
Query: 369 VPWELGPFLFVG-YTCLVAGLGQDLTV 292
VP+ GP V YTCL++ +GQ+L V
Sbjct: 52 VPYWWGPSAKVAVYTCLLSSIGQNLVV 78
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,029,186
Number of Sequences: 27780
Number of extensions: 241442
Number of successful extensions: 615
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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