Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_K06
(502 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 207 8e-55
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 125 4e-30
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 112 2e-26
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 86 2e-18
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 78 9e-16
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 76 3e-15
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 76 3e-15
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 75 5e-15
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 75 6e-15
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 75 8e-15
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 71 7e-14
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 67 2e-12
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 66 3e-12
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 66 3e-12
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 64 1e-11
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 62 6e-11
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 60 2e-10
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 58 7e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 58 1e-09
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 53 2e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 49 3e-07
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 42 5e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 38 6e-04
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 38 6e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 36 0.003
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 33 0.032
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.13
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 29 0.39
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 28 0.91
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 1.6
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 26 3.7
SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce... 26 3.7
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 4.8
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi... 25 4.8
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo... 25 4.8
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 4.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 8.4
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 8.4
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 25 8.4
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 8.4
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 207 bits (505), Expect = 8e-55
Identities = 92/163 (56%), Positives = 122/163 (74%)
Frame = +2
Query: 14 GQNMRRPNWDSLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFE 193
G N+ + +W + +L PF KDFY H++V +RS EV +YR + E+ V G+ VP P+ FE
Sbjct: 66 GANLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFE 125
Query: 194 EANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHIT 373
EA FP+YV + +K +G++ PTPIQ Q WP+AMSG+++VG++ TGSGKTL+Y LPAIVHI
Sbjct: 126 EAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHIN 185
Query: 374 NQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGHSSYVRNTC 502
QP + GDGPI LVLAPTRELA QIQQ ++FG SS +RNTC
Sbjct: 186 AQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTC 228
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 125 bits (301), Expect = 4e-30
Identities = 58/153 (37%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Frame = +2
Query: 47 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHE-VTVSGVEVPNPIEHFEEANFPDYVCQ 223
++ + F KDFY + + + SP EV++ R + + + G++ P P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 224 AIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHITNQPPIRRGDG 403
I S+GY+ PT IQAQ P SG++++GVA+TGSGKT+A++LP HI +Q P++ G+G
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEG 491
Query: 404 PIALVLAPTRELAQQIQQVASEFGHSSYVRNTC 502
PIA+++ PTRELA QI + F +R C
Sbjct: 492 PIAIIMTPTRELAVQIFRECKPFLKLLNIRACC 524
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 112 bits (270), Expect = 2e-26
Identities = 49/117 (41%), Positives = 80/117 (68%), Gaps = 3/117 (2%)
Frame = +2
Query: 131 RNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVG 310
+ + +++ G ++PNP+ ++EEA P + + +K + YK+P+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 311 VAQTGSGKTLAYILPAIVHITNQPPIRRGD---GPIALVLAPTRELAQQIQQVASEF 472
+A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ ++F
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKF 348
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 86.2 bits (204), Expect = 2e-18
Identities = 44/103 (42%), Positives = 64/103 (62%)
Frame = +2
Query: 188 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 367
F+E D +C+A + +G+K PTPIQ + P+ ++ ++++G+AQTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 368 ITNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGHSSYVRN 496
+ N P A+VLAPTRELA QI + G S VR+
Sbjct: 108 LWNNP-----SPFFAVVLAPTRELAYQISEQFEAIGGSIGVRS 145
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 77.8 bits (183), Expect = 9e-16
Identities = 41/94 (43%), Positives = 56/94 (59%)
Frame = +2
Query: 188 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 367
F+ N ++ A+ + G+K TP+QA P+ + K+LV A TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 368 ITNQPPIRRGDGPIALVLAPTRELAQQIQQVASE 469
+T + G G AL++APTRELA QI V E
Sbjct: 63 VTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 76.2 bits (179), Expect = 3e-15
Identities = 41/110 (37%), Positives = 68/110 (61%), Gaps = 3/110 (2%)
Frame = +2
Query: 128 YRNKHEVTVSGVEVPN---PIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGK 298
Y KH ++ + + PI F+E + + + +K+ YK+PTPIQA WP ++G+
Sbjct: 146 YIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGR 203
Query: 299 NLVGVAQTGSGKTLAYILPAIVHITNQPPIRRGDGPIALVLAPTRELAQQ 448
++VG+A+TGSGKT+A+ +PA+ ++ + P LV++PTRELA Q
Sbjct: 204 DVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 75.8 bits (178), Expect = 3e-15
Identities = 47/129 (36%), Positives = 68/129 (52%), Gaps = 13/129 (10%)
Frame = +2
Query: 146 VTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTG 325
V VSG ++ P+ F ++ Q IK GY PTP+Q PI SG++L+ AQTG
Sbjct: 158 VEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 326 SGKTLAYILPAI-VHITNQP---PIRRGDG---------PIALVLAPTRELAQQIQQVAS 466
SGKT ++ P + + P P+ + G P L+LAPTREL QI + +
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276
Query: 467 EFGHSSYVR 493
+F + S+VR
Sbjct: 277 KFCYRSWVR 285
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 75.4 bits (177), Expect = 5e-15
Identities = 45/120 (37%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Frame = +2
Query: 116 EVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSG 295
E ED R + V ++ + IE F + + + +AIK MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 296 KNLVGVAQTGSGKTLAYILPAI--VHITNQPPIRRGDGPIALVLAPTRELAQQIQQVASE 469
++++G A+TGSGKTLA+++P I ++ P R G G ++++PTRELA QI VA E
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 74.9 bits (176), Expect = 6e-15
Identities = 39/102 (38%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Frame = +2
Query: 158 GVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 337
G+ + + F + N + +AI ++ PT +Q++ P+A+ GK+LV A+TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 338 LAYILPAIVHITNQPPIRRGD-GPIALVLAPTRELAQQIQQV 460
AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 74.5 bits (175), Expect = 8e-15
Identities = 37/104 (35%), Positives = 62/104 (59%)
Frame = +2
Query: 185 HFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 364
+F+ + +AI G+K PTPIQ + P+ + G+++VG+A+TGSGKT A+++P I
Sbjct: 70 NFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIE 129
Query: 365 HITNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGHSSYVRN 496
H+ + AL+L+P RELA Q +V +F + +R+
Sbjct: 130 HLKS---TLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRS 170
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 71.3 bits (167), Expect = 7e-14
Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 4/150 (2%)
Frame = +2
Query: 32 PNWDSLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPI----EHFEEA 199
P++ ++S Q FN D + S + E+ K+ G + + + F+
Sbjct: 209 PSFANISTQDFNSD----SAAGSSDSEEDEEEIAKKNAFFAEGDKEKSMMTTTHSSFQSM 264
Query: 200 NFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHITNQ 379
N + + + ++G++ PT IQ + P+A+ GK++VG A TGSGKT A+I+P + + +
Sbjct: 265 NLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYR 324
Query: 380 PPIRRGDGPIALVLAPTRELAQQIQQVASE 469
P ++ L+L PTRELA Q VA++
Sbjct: 325 P--KKVPTTRVLILCPTRELAMQCHSVATK 352
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 66.9 bits (156), Expect = 2e-12
Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Frame = +2
Query: 41 DSLSLQPFNKDFYN--PHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDY 214
D+L L N F N P S+ ++ +++ K + V+G +PIE F E
Sbjct: 2 DALKLLTTNVKFKNKVPQPSIKEKEAKKLQGI-TKGKAKVTGNNPVDPIEEFPEG----I 56
Query: 215 VCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHITNQPPIRR 394
+C+ +K + T IQ P S ++L+ A TGSGKT+AY+ P + + P
Sbjct: 57 LCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP--- 113
Query: 395 GDGPIALVLAPTRELAQQIQQVASE--FGHS 481
G A+++APTREL +QI + A + FG S
Sbjct: 114 -GGYRAIIVAPTRELCEQIYRQAEKLSFGTS 143
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 66.1 bits (154), Expect = 3e-12
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 9/129 (6%)
Frame = +2
Query: 134 NKHEVTVSGVEV---PNP----IEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMS 292
NK+EV V ++ PN ++ FEE + + I SM ++ P+ IQ + P+ +S
Sbjct: 91 NKNEVRVKLADLQADPNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLS 150
Query: 293 G--KNLVGVAQTGSGKTLAYILPAIVHITNQPPIRRGDGPIALVLAPTRELAQQIQQVAS 466
+N++G +Q+G+GKT A+ L + + P P A+ LAP+RELA+QI V +
Sbjct: 151 NPPRNMIGQSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVT 205
Query: 467 EFGHSSYVR 493
E G + V+
Sbjct: 206 EMGKYTEVK 214
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 66.1 bits (154), Expect = 3e-12
Identities = 38/99 (38%), Positives = 58/99 (58%)
Frame = +2
Query: 179 IEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 358
++HF E A+K+ + T IQ Q P A+ G++++G A+TGSGKTLA+I+P
Sbjct: 38 VDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPL 97
Query: 359 IVHITNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 475
I ++ + DG ALV++PTRELA Q + + G
Sbjct: 98 IENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIG 135
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 63.7 bits (148), Expect = 1e-11
Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Frame = +2
Query: 188 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 367
FE+ + I G++ P+PIQ + PIA+SG++++ A+ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 368 I-TNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGHSSYVR 493
+ T + I+ L+L PTRELA Q QV G V+
Sbjct: 106 VDTKKSKIQ------TLILVPTRELALQTSQVCKTLGKHMNVK 142
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 61.7 bits (143), Expect = 6e-11
Identities = 47/123 (38%), Positives = 63/123 (51%)
Frame = +2
Query: 89 KSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQA 268
K+ + S E ED N H V VS HF + P+ + K+ G+ P PIQ+
Sbjct: 100 KNYNEFSTLEEEDEHNSHGVDVSAWA------HFSLS--PEMLGSLSKA-GFSKPMPIQS 150
Query: 269 QGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHITNQPPIRRGDGPIALVLAPTRELAQQ 448
P A G +++G A TGSGKTLA+ +P + H + ALV+APTRELA Q
Sbjct: 151 LVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQ---ALVVAPTRELAHQ 207
Query: 449 IQQ 457
I Q
Sbjct: 208 ICQ 210
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 60.1 bits (139), Expect = 2e-10
Identities = 34/96 (35%), Positives = 50/96 (52%)
Frame = +2
Query: 188 FEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 367
F + ++ +K++ +PT IQ + G+N +G A+TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 368 ITNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 475
+ P G AL+L PTRELA QI + + G
Sbjct: 69 WSKDP-----SGIFALILTPTRELAIQIDEQFAALG 99
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 58.0 bits (134), Expect = 7e-10
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Frame = +2
Query: 143 EVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQT 322
E+T S E N + FEE N + + + I + GY+ P+ +Q++ G++++ AQ+
Sbjct: 10 ELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQS 67
Query: 323 GSGKTLAYILPAIVHITNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG-HSSYVRNT 499
G+GKT + + + I +R AL+L+PTRELA QIQ V G H + +
Sbjct: 68 GTGKTATFSIGILQSI--DLSVRDTQ---ALILSPTRELAVQIQNVVLALGDHMNVQCHA 122
Query: 500 C 502
C
Sbjct: 123 C 123
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 57.6 bits (133), Expect = 1e-09
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Frame = +2
Query: 236 MGYKDPTPIQAQGWPIAMS--GKNLVGVAQTGSGKTLAYILPAIVHITNQPP--IRRGDG 403
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 404 PIALVLAPTRELAQQIQQVASEFGHS 481
A+++APTREL QQI VA++ ++
Sbjct: 217 IYAVIMAPTRELCQQIYNVANKLNNN 242
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 53.2 bits (122), Expect = 2e-08
Identities = 31/99 (31%), Positives = 56/99 (56%)
Frame = +2
Query: 179 IEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 358
I+ F++ N + + I + G++ P+ IQ + + ++++ AQ+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 359 IVHITNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 475
+ I +++ AL+LAPTRELAQQIQ+V G
Sbjct: 78 LQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALG 111
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 49.2 bits (112), Expect = 3e-07
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Frame = +2
Query: 155 SGVEVPNPIEHFEEANFPDYVCQAIKSMGYKDPTPIQAQGW-PIAMSGKNLVGVAQTGSG 331
S ++ P E A+ ++ G++ TP+Q + + + +N V A+TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 332 KTLAYILPAIVHITNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGHSSYVR 493
KTLA++L A + P +++L+PTRELA QI + A + + + +R
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIR 142
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.9 bits (94), Expect = 5e-05
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +2
Query: 221 QAIKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHITNQPPIRRGD 400
+AI G++ P+ +Q P ++ G +++ A++G GKT ++L + I P+ D
Sbjct: 64 RAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---D 117
Query: 401 GPIA-LVLAPTRELAQQIQQVASEF 472
G ++ LVL TRELA QI+ + F
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARF 142
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 38.3 bits (85), Expect = 6e-04
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +2
Query: 299 NLVGVAQTGSGKTLAYILPAIVHITNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 475
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q + +E G
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDMMLRVNEKG 1265
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 38.3 bits (85), Expect = 6e-04
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +2
Query: 299 NLVGVAQTGSGKTLAYILPAIVHITNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 475
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q + +E G
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDMMLRVNEKG 1265
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 36.3 bits (80), Expect = 0.003
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +2
Query: 278 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHITNQ--PPIRRGDGPIALVLAPTRELAQQI 451
P+ G ++ A TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 32.7 bits (71), Expect = 0.032
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Frame = +2
Query: 116 EVEDYRNKHEVTVSGVEVPNPI--EHFEEANFPDYVCQAIKSMGYKDPTPIQAQGWPIAM 289
E EDY+ E+ V + + E E + D +C+ + Y+ IQ+ +PIA
Sbjct: 232 EREDYQKYEEIIVPHAQRAPQMQGEKLLEISSMDILCRKT-FLSYQTLNRIQSLVYPIAY 290
Query: 290 -SGKNLVGVAQTGSGKTLAYILPAIVHITN 376
+ +N++ A TG+GKT +L + I+N
Sbjct: 291 KTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.7 bits (66), Expect = 0.13
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +2
Query: 287 MSGKNLVGVAQTGSGKTLAYILPAIVHITNQPPIRRGDGPIALVLAPTRELAQ 445
+SGK++ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 29.1 bits (62), Expect = 0.39
Identities = 10/40 (25%), Positives = 25/40 (62%)
Frame = -1
Query: 229 YCLTHIIWKVCLFKMFNRIRYFNSTNSDFVFVSIVLYFIW 110
+ ++++I + L ++F+ +R+ N+ ++F SIV + W
Sbjct: 856 WAVSNLILAIVLIQVFDGMRFINNGYMKYIFWSIVAFTAW 895
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 27.9 bits (59), Expect = 0.91
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 227 IKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHITNQPPIRRGD 400
+ ++GY D P G P+ ++GK + V GK +L + +T+ P ++RGD
Sbjct: 280 VVAIGYGDGFPQVRNGCPVIINGKRVPTV-----GKVCMDML--AIDVTDVPDVKRGD 330
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 1.6
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 110 PYEVEDYRNKHEVTVSGVE-VPNPI 181
PYE++ YRNKH +S + +PN +
Sbjct: 253 PYEIQVYRNKHWFPISTEDLLPNDV 277
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +1
Query: 193 RGKLSRLCVSSNKKYGLQRSYPYT---GSRMANRYVREKLG 306
+ K++ +C+S + KY L P+T NR VR+ +G
Sbjct: 383 QSKVTSICLSKDSKYALTNLEPHTTFLWDLEENRIVRQYMG 423
>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 56
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 196 GKLSRLCVSSNKKYGLQRSYPYTGSRMANRYVREKLGW 309
GK SR C + ++ GL R Y SR + R +G+
Sbjct: 15 GKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGF 52
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.4 bits (53), Expect = 4.8
Identities = 25/121 (20%), Positives = 42/121 (34%)
Frame = +2
Query: 65 NKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGY 244
N YNP ++ L R+P + S P P +N P ++KS
Sbjct: 342 NASTYNPPRAPLQRTPSGSLTPLSSRPAHTS--LPPIPTVQTTSSNVPPVNRPSLKSKSP 399
Query: 245 KDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHITNQPPIRRGDGPIALVLA 424
+ Q PI+ + +++ Q S A + P +RR D ++
Sbjct: 400 SVSNILSNQLSPISSANNDVMARLQPKSPIPATKSYSATIQTPRSPSLRRADSTSHIIKV 459
Query: 425 P 427
P
Sbjct: 460 P 460
>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 4.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 433 RTCSTNTAGCFRIWPFI 483
RTC + T C + WPFI
Sbjct: 141 RTCCSKTNICEKCWPFI 157
>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 25.4 bits (53), Expect = 4.8
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 92 SVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANF-PDYVCQAIKSMGYKD 250
S L R Y E+Y + + N +EH + F D + Q +++GY +
Sbjct: 27 SALGRRGYHSENYETSKISGKKALILENALEHVPQLGFTEDAIVQGGQALGYSN 80
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +2
Query: 89 KSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGYK 247
+ D P +DYR+ +T S + N + +E + Y+CQ + S+ +
Sbjct: 919 REAFDGRPDFSKDYRSLLSITQSCNTLSNFYRNAQEKSLHAYLCQLLHSINLR 971
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +2
Query: 227 IKSMGYKDPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHITNQ 379
I+ GY P P+QA G+ M + TG + ++P + + Q
Sbjct: 1057 IQPTGYMQPIPVQATGYQPLMVQPTGLQPHMTGVMPQVTGVMPQMTGVVPQ 1107
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 114 YGDLSKTDL*GL*KSLLNGWSDSESQLGRRIFCPPAS 4
YG+ DL L + +G ++SE Q+ FCP +S
Sbjct: 2667 YGNSITNDLSRLCADVKSGKNESELQVALAPFCPASS 2703
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 50 SLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNP 178
S+ +NKD N K RS ++ + K + S VE+ P
Sbjct: 744 SVNDYNKDETNFRKHNAKRSKTDIRSWFEKKQPIDSDVEISEP 786
>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 24.6 bits (51), Expect = 8.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2
Query: 72 SLLNGWSDSESQLGRRIFCPP 10
+++ WSD S L R++C P
Sbjct: 76 TIIQSWSDKVSVLPNRLYCLP 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,541
Number of Sequences: 5004
Number of extensions: 46242
Number of successful extensions: 203
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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