Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K05
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   153   1e-38
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    49   3e-07
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   3.5  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    25   6.1  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    25   6.1  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    25   6.1  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   6.1  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   8.0  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  153 bits (371), Expect = 1e-38
 Identities = 71/132 (53%), Positives = 95/132 (71%)
 Frame = +1

Query: 91  KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHL 270
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG + ++MGKNTM+R+A++  +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 271 ETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 450
              P LE+LLP ++GNVGFVFT  DL +VR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68  NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127

Query: 451 LGPEKTSFFQAL 486
           + P KTSFFQAL
Sbjct: 128 MEPGKTSFFQAL 139


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 49.2 bits (112), Expect = 3e-07
 Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 3/129 (2%)
 Frame = +1

Query: 61  KMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNT 240
           K G E KA      F  + Q LD +   +I    N+ +  +++IR   +G S + MGK  
Sbjct: 17  KKGHEGKAA----LFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWKG-SRIFMGKTK 71

Query: 241 MMRKAIKDHLETNPA--LEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAP-ARPGAI 411
           +M KA+    E   A  + KL   + G VG +FT     +V     E+ VQ   AR GA+
Sbjct: 72  VMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAV 130

Query: 412 APLSVVIPA 438
           AP + VIPA
Sbjct: 131 APFTHVIPA 139


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 43  PYFTQSKMGREDKATWKSNY 102
           PYF Q+ M   D A+W SN+
Sbjct: 318 PYFQQALMINVDLASWASNF 337


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 461 SGPRPVL*AGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRV 333
           +G  PV    +  + G++ P  AGAW L  N L    T   ++
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKM 180


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 217 IVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLV 351
           I L+G N ++     DH++ +P ++   P+I      V ++GDLV
Sbjct: 401 IPLLGMNKVILAG--DHMQLSPNVQSKRPYISMFERLVKSQGDLV 443


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 211 HSIVLMGKNTMMRKAIKDHLE 273
           HS++   KNT   KA+  HLE
Sbjct: 408 HSLLQKSKNTSSTKALTSHLE 428


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 237 HHDEESHQGPS*NKSSSRKTASSHQG 314
           HH+ +     S   S+SRK A SH G
Sbjct: 431 HHNNDKRAHVSRRHSTSRKIAQSHTG 456


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -2

Query: 474 ERSLLRTKASVMSGNDDRQWSNGSRTSRGLDFVLQQFITHINKISTGEDKANISLD 307
           ++ +L  K  +    D+R       + R LD  LQ    +I +IST  +  N +L+
Sbjct: 271 KQEVLILKEKIKKIEDERMRQMSVSSDRTLDSQLQTVNENITRISTSIELKNTALE 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,973
Number of Sequences: 5004
Number of extensions: 47568
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)