Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_K05
(487 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 210 3e-55
U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical pr... 44 6e-05
Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical p... 29 1.8
Z77652-7|CAB01119.1| 341|Caenorhabditis elegans Hypothetical pr... 29 1.8
AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical ... 29 1.8
Z82266-17|CAJ80813.1| 446|Caenorhabditis elegans Hypothetical p... 28 4.1
Z82266-16|CAJ80812.1| 423|Caenorhabditis elegans Hypothetical p... 28 4.1
Z82266-15|CAD36491.1| 608|Caenorhabditis elegans Hypothetical p... 28 4.1
Z82266-14|CAD36490.1| 467|Caenorhabditis elegans Hypothetical p... 28 4.1
Z82266-10|CAJ80811.1| 331|Caenorhabditis elegans Hypothetical p... 28 4.1
Z68213-11|CAJ80817.1| 446|Caenorhabditis elegans Hypothetical p... 28 4.1
Z68213-10|CAJ80816.1| 423|Caenorhabditis elegans Hypothetical p... 28 4.1
Z68213-9|CAD37352.1| 608|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z68213-8|CAA92439.3| 467|Caenorhabditis elegans Hypothetical pr... 28 4.1
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ... 28 4.1
AL117206-1|CAB60446.1| 644|Caenorhabditis elegans Hypothetical ... 27 5.5
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 27 7.2
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 27 7.2
X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic int... 27 9.5
U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate fi... 27 9.5
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 210 bits (514), Expect = 3e-55
Identities = 93/141 (65%), Positives = 118/141 (83%)
Frame = +1
Query: 64 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 243
M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RGH+ +LMGKNTM
Sbjct: 1 MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60
Query: 244 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 423
+RKA++ HL NP+LEKLLPHI NVGFVFT+ DL ++R KLLEN+ APA+ GAIAP
Sbjct: 61 IRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCD 120
Query: 424 VVIPAHNTGLGPEKTSFFQAL 486
V +P NTG+GPEKTSFFQAL
Sbjct: 121 VKLPPQNTGMGPEKTSFFQAL 141
>U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical
protein F10E7.5 protein.
Length = 220
Score = 44.0 bits (99), Expect = 6e-05
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Frame = +1
Query: 58 SKMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKN 237
+K+ ++ K T K+N ++ +D+Y FI N+ S + IR + +S GKN
Sbjct: 13 TKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENSRFFFGKN 71
Query: 238 TMMRKAIKDHLETNPA--LEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 411
++ A+ A L K +KG G +FT +V + E + AR G +
Sbjct: 72 NVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDV 131
Query: 412 APLSVVIP 435
A +VV+P
Sbjct: 132 ATETVVLP 139
>Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 29.1 bits (62), Expect = 1.8
Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +1
Query: 142 CFIVGAD--NVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIKG 315
C G D + GS + + R + GH+ +L + + ++DH+++ ++K+ +
Sbjct: 181 CGFCGKDFFHEGSLREHRRRFHMTGHTCLLCNRQIPENETVRDHMKSQHNIKKVYNCLCC 240
Query: 316 NVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSV 426
N F+ + L+ L+ + RPG + PL++
Sbjct: 241 NWTFL-NQVHLIS-HKTCLKQTGKPCCRPGHMEPLAI 275
>Z77652-7|CAB01119.1| 341|Caenorhabditis elegans Hypothetical
protein C06B3.10 protein.
Length = 341
Score = 29.1 bits (62), Expect = 1.8
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -2
Query: 378 VLQQFITHI-NKISTGEDKANISLDVRKQFFESWICFKMVLDGFPHHGVFAHEHNAVTTQ 202
++ F+ HI + IS NIS++ Q I LD P+ + NA+ TQ
Sbjct: 254 IIPVFLMHIPSTISMCAAFTNISIEFISQILSCTISLYPALDPLPNFFIIKSYRNAI-TQ 312
Query: 201 *NTDLLHLL 175
TD L LL
Sbjct: 313 YLTDFLRLL 321
>AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 29.1 bits (62), Expect = 1.8
Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +1
Query: 142 CFIVGAD--NVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIKG 315
C G D + GS + + R + GH+ +L + + ++DH+++ ++K+ +
Sbjct: 181 CGFCGKDFFHEGSLREHRRRFHMTGHTCLLCNRQIPENETVRDHMKSQHNIKKVYNCLCC 240
Query: 316 NVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSV 426
N F+ + L+ L+ + RPG + PL++
Sbjct: 241 NWTFL-NQVHLIS-HKTCLKQTGKPCCRPGHMEPLAI 275
>Z82266-17|CAJ80813.1| 446|Caenorhabditis elegans Hypothetical
protein C01F6.6d protein.
Length = 446
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +3
Query: 213 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 314
+H H Q HH HQ PS N SS ASS G
Sbjct: 369 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 404
>Z82266-16|CAJ80812.1| 423|Caenorhabditis elegans Hypothetical
protein C01F6.6c protein.
Length = 423
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +3
Query: 213 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 314
+H H Q HH HQ PS N SS ASS G
Sbjct: 346 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 381
>Z82266-15|CAD36491.1| 608|Caenorhabditis elegans Hypothetical
protein C01F6.6b protein.
Length = 608
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +3
Query: 213 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 314
+H H Q HH HQ PS N SS ASS G
Sbjct: 531 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 566
>Z82266-14|CAD36490.1| 467|Caenorhabditis elegans Hypothetical
protein C01F6.6a protein.
Length = 467
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +3
Query: 213 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 314
+H H Q HH HQ PS N SS ASS G
Sbjct: 390 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 425
>Z82266-10|CAJ80811.1| 331|Caenorhabditis elegans Hypothetical
protein C01F6.6e protein.
Length = 331
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +3
Query: 213 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 314
+H H Q HH HQ PS N SS ASS G
Sbjct: 254 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 289
>Z68213-11|CAJ80817.1| 446|Caenorhabditis elegans Hypothetical
protein C01F6.6d protein.
Length = 446
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +3
Query: 213 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 314
+H H Q HH HQ PS N SS ASS G
Sbjct: 369 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 404
>Z68213-10|CAJ80816.1| 423|Caenorhabditis elegans Hypothetical
protein C01F6.6c protein.
Length = 423
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +3
Query: 213 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 314
+H H Q HH HQ PS N SS ASS G
Sbjct: 346 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 381
>Z68213-9|CAD37352.1| 608|Caenorhabditis elegans Hypothetical
protein C01F6.6b protein.
Length = 608
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +3
Query: 213 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 314
+H H Q HH HQ PS N SS ASS G
Sbjct: 531 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 566
>Z68213-8|CAA92439.3| 467|Caenorhabditis elegans Hypothetical
protein C01F6.6a protein.
Length = 467
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +3
Query: 213 QHCAHGQKHHDEESHQGPS--*NKSSSRKTASSHQG 314
+H H Q HH HQ PS N SS ASS G
Sbjct: 390 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 425
>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
protein Y46B2A.3 protein.
Length = 1145
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 428 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVKTKPT 318
TT P AG WT+ +N ++R TR P +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227
>AL117206-1|CAB60446.1| 644|Caenorhabditis elegans Hypothetical
protein Y67A10A.1 protein.
Length = 644
Score = 27.5 bits (58), Expect = 5.5
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -2
Query: 381 FVLQQFITHINKISTGEDKANISLDVRKQFFESWICFKMVLDGFPH-HGVFAH--EHNAV 211
F++ +++ +I +DK ++ +E ++ +LD FP H F + H AV
Sbjct: 494 FIVARYMNNIKNPVQKDDKIVQQINETIAHYEKYVKKLYILDAFPEFHENFLNLFLHYAV 553
Query: 210 TTQ*NTDLLHL 178
T + D LHL
Sbjct: 554 TRPDDMDALHL 564
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 222 AHGQKHHDEESHQGPS*NKSSSRKTASS 305
+HG+KHH + + S + SSS ++SS
Sbjct: 329 SHGKKHHKKAASSSSSSSSSSSSSSSSS 356
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 478 GRKKSSQDQGQCYERE*RQTMEQWLQDE 395
GRKK ++ QC +RE R EQ DE
Sbjct: 424 GRKKREAERDQCLKREKRYADEQCDNDE 451
>X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 575
Score = 26.6 bits (56), Expect = 9.5
Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Frame = +1
Query: 4 RGRICLVLKFLRSPYFTQSKMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQM 183
+ + ++ +RS Y S R D +W Y +K+ ++ + + + N +++
Sbjct: 274 KNELSSAIREIRSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEV 328
Query: 184 QQIRISL---RGHSIVLMGKNTMMRKAIKD 264
+++R +L RG L G+N ++ K I+D
Sbjct: 329 KRLRTTLGDMRGKMADLEGRNLLLEKQIED 358
>U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate
filament, a protein 4 protein.
Length = 558
Score = 26.6 bits (56), Expect = 9.5
Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Frame = +1
Query: 4 RGRICLVLKFLRSPYFTQSKMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQM 183
+ + ++ +RS Y S R D +W Y +K+ ++ + + + N +++
Sbjct: 257 KNELSSAIREIRSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEV 311
Query: 184 QQIRISL---RGHSIVLMGKNTMMRKAIKD 264
+++R +L RG L G+N ++ K I+D
Sbjct: 312 KRLRTTLGDMRGKMADLEGRNLLLEKQIED 341
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,557,218
Number of Sequences: 27780
Number of extensions: 270339
Number of successful extensions: 803
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -