Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_K04
(500 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 27 1.2
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 2.1
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 2.1
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 26 2.8
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 26 2.8
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 25 4.8
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 25 4.8
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 25 6.4
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.4
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 27.5 bits (58), Expect = 1.2
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +2
Query: 149 IQRGSKSNELLIKAAREMASTENQMESADENLKKMQLISVHIGYQYENIHKSAQVLSEIK 328
I++GS + L+ K + + + E KK+ I HIG + A+VLS
Sbjct: 29 IKQGSATVGLVSKTHAVLVALKRNAEELSSYQKKLIRIDDHIGIAIAGLAPDARVLSNYM 88
Query: 329 EQ 334
+Q
Sbjct: 89 KQ 90
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 2.1
Identities = 19/88 (21%), Positives = 38/88 (43%)
Frame = +2
Query: 89 QRLAERVQVNMNNITSLGRHIQRGSKSNELLIKAAREMASTENQMESADENLKKMQLISV 268
++L E+ N+ + R ++ K +L+ E+ S + + NL+K+Q +
Sbjct: 274 EKLKEKEGSIRRNLLAFDRKVR---KQEKLIASKRPELISIAEKALESKSNLRKIQRKAA 330
Query: 269 HIGYQYENIHKSAQVLSEIKEQIMAMQK 352
I Y + + QVL + A +K
Sbjct: 331 EIEKDYSDQASTLQVLENQLTSLSAAEK 358
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.6 bits (56), Expect = 2.1
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +2
Query: 101 ERVQVNMNNITSLGRHIQRGSKSNELLIKAAREMASTENQMESADENLKKMQLISVHIGY 280
ER +V + L I + + NELL K + + ++ + ++ + SVH
Sbjct: 1502 ERKKVMQQEVLRLRSRIAKELQKNELLRKQNQVLQDQVKALQETVVSSEEAESASVHADT 1561
Query: 281 Q-YENIHKSAQVLS 319
+ EN+ K+ ++LS
Sbjct: 1562 KDLENLKKTEEMLS 1575
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 26.2 bits (55), Expect = 2.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 101 ERVQVNMNNITSLGRHIQRGSKSNELLIKAAREMASTENQ 220
E V + + +L +Q + S ELLIK ++ STE++
Sbjct: 972 EGVFSTLITVDNLDAQVQSCADSTELLIKVLSDLGSTEDE 1011
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 26.2 bits (55), Expect = 2.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 164 KSNELLIKAAREMASTENQMESADENLKKMQLISVHIGYQ 283
KSN LL+K + S N +E + L+ Q + ++ YQ
Sbjct: 161 KSNGLLVKPGMDQLSLINGLEEPPKELQSHQSVELYRLYQ 200
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 25.4 bits (53), Expect = 4.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 454 ESKIFVNVFI*LHXFQLFNAHYKYALFFFKHDLSFLHC 341
E ++F +V L F L A+Y++ FKH+L+ L C
Sbjct: 195 ELRLFEDVETYLLNFLLKPAYYRFLNHKFKHNLNPLTC 232
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 25.4 bits (53), Expect = 4.8
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = -3
Query: 381 HYFFLNMIYHFCIAIIC 331
H++F++++ C+AIIC
Sbjct: 293 HHYFVDLVGGMCLAIIC 309
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.0 bits (52), Expect = 6.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 107 PFQLIFVLILRIKNGRCSMTPKSLHRCLLYRLFP 6
P+ L VL R +GRCS +SL +LY+ P
Sbjct: 46 PYHL-HVLDSRYADGRCSAAMRSLSNYVLYKNNP 78
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 158 LFVCVDLMMLYCSYLLEPFQLIFVLILRIKNG 63
L + + L+ + L PF +F+ ILR +NG
Sbjct: 443 LLWATEAIPLFVTSFLVPFMTVFLKILRDENG 474
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,898,901
Number of Sequences: 5004
Number of extensions: 35312
Number of successful extensions: 94
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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