Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K04
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p...    29   1.4  
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ...    29   1.4  
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ...    29   1.4  
U23511-4|AAC46793.1|  288|Caenorhabditis elegans Temporarily ass...    28   3.3  
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical...    27   5.8  
AL033514-36|CAH19095.1|  222|Caenorhabditis elegans Hypothetical...    27   7.6  

>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
           protein C24F3.5 protein.
          Length = 1479

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 426 SDYTXSNFSMHTINMHYFFLNMIYHFCIAIICSLI 322
           S Y     S+H    HYF    ++ + IA+I SLI
Sbjct: 168 SGYYNMFLSLHARRFHYFIAKFVFWYGIALIISLI 202


>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
           protein C24F3.5 protein.
          Length = 1479

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 426 SDYTXSNFSMHTINMHYFFLNMIYHFCIAIICSLI 322
           S Y     S+H    HYF    ++ + IA+I SLI
Sbjct: 168 SGYYNMFLSLHARRFHYFIAKFVFWYGIALIISLI 202


>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
           protein C24F3.5 protein.
          Length = 1479

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 426 SDYTXSNFSMHTINMHYFFLNMIYHFCIAIICSLI 322
           S Y     S+H    HYF    ++ + IA+I SLI
Sbjct: 168 SGYYNMFLSLHARRFHYFIAKFVFWYGIALIISLI 202


>U23511-4|AAC46793.1|  288|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 337 protein.
          Length = 288

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 337 NLLFDFRQHLS*FMNIFIL 281
           N LF+FR H+  F+N+FIL
Sbjct: 103 NKLFEFRDHIVRFLNMFIL 121


>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
           protein Y39B6A.18 protein.
          Length = 1352

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
 Frame = +2

Query: 113 VNMNNITSLGRHIQRGSKSNELLIKAAREMASTENQMESA-------DENLKKMQLISVH 271
           +  NNI SL + IQ   K  E   KA R + S +N + S        DENLKK+    ++
Sbjct: 446 IRSNNI-SLTK-IQESVKGIENQFKAVR-LDSLKNDVFSKISDVFRKDENLKKVITAEIN 502

Query: 272 IGYQYENIHKSAQVLSEIKEQIMAMQ 349
           +    +N+   + V+SE  + I  ++
Sbjct: 503 VNKCLQNLKNESLVISEALKTIQKLR 528


>AL033514-36|CAH19095.1|  222|Caenorhabditis elegans Hypothetical
           protein Y75B8A.39 protein.
          Length = 222

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +2

Query: 107 VQVNMNNITSLGRHIQRGSKSNELLIKAAREMASTENQMESADEN 241
           +Q   NN  ++ + ++ G   ++ LIK  + +A  EN+++   E+
Sbjct: 81  LQYYNNNKQAIEKMVEHGKSQDQNLIKRQKALADAENELKVKKEH 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,391,894
Number of Sequences: 27780
Number of extensions: 197175
Number of successful extensions: 523
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)