Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_K03
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 129 2e-30
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 126 1e-29
10_02_0202 - 6770448-6770561,6771185-6771279,6771638-6771686,677... 31 0.58
03_01_0205 + 1621760-1621784,1622079-1622208,1622569-1622635,162... 31 0.58
04_03_0022 + 9615468-9615568,9617300-9617474,9617563-9617682 29 2.3
10_08_0694 - 19929918-19930292,19930633-19930866 28 5.4
05_04_0020 - 17199627-17199947,17200129-17200203,17200301-172003... 27 9.4
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 27 9.4
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 129 bits (311), Expect = 2e-30
Identities = 62/121 (51%), Positives = 89/121 (73%), Gaps = 2/121 (1%)
Frame = +1
Query: 271 LRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINV 450
LRP+V+C T++Y+ K RAGRGFTL E++A+G+ FA TIGI+VD RR+N+S+E LQ NV
Sbjct: 54 LRPIVQCQTLKYNMKSRAGRGFTLEELKAAGIPKKFAPTIGISVDHRRKNRSLEGLQANV 113
Query: 451 QRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSV-ARPITDDE 624
QRLK Y+A+L++FP + +KV G++ EE ATQ++G MP+ + +SV +TDD
Sbjct: 114 QRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEKRSVEVVKVTDDM 173
Query: 625 K 627
K
Sbjct: 174 K 174
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 126 bits (304), Expect = 1e-29
Identities = 60/121 (49%), Positives = 89/121 (73%), Gaps = 2/121 (1%)
Frame = +1
Query: 271 LRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINV 450
LRP+V+C T++Y+ K RAGRGFTL E++A+G+ +A TIGI+VD RR+N+S+E LQ NV
Sbjct: 54 LRPIVQCQTLKYNMKSRAGRGFTLEELKAAGIPKKYAPTIGISVDHRRKNRSLEGLQANV 113
Query: 451 QRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSV-ARPITDDE 624
QRLK Y+A+L++FP + +KV G++ EE ATQ++G MP+ + +SV +TD+
Sbjct: 114 QRLKTYKAKLVIFPRRARKVKAGDSTAEELATATQVQGDYMPIARGEKRSVEVVKVTDEM 173
Query: 625 K 627
K
Sbjct: 174 K 174
>10_02_0202 -
6770448-6770561,6771185-6771279,6771638-6771686,
6771795-6771843,6772035-6772228
Length = 166
Score = 31.5 bits (68), Expect = 0.58
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 115 VRGLYESQWPFPKDWERFWEE 177
V G + WP P DWER W+E
Sbjct: 110 VIGAWLGAWPMPLDWERPWQE 130
>03_01_0205 +
1621760-1621784,1622079-1622208,1622569-1622635,
1622806-1622909,1623099-1623147,1623190-1623290,
1623623-1623740,1624342-1624455
Length = 235
Score = 31.5 bits (68), Expect = 0.58
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 115 VRGLYESQWPFPKDWERFWEE 177
V G + WP P DWER W+E
Sbjct: 179 VIGAWLGAWPMPLDWERPWQE 199
>04_03_0022 + 9615468-9615568,9617300-9617474,9617563-9617682
Length = 131
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 98 TNFAVKPSCRIPQPGGSN*FRAAATAV 18
T F + P +P+PGG + +RA TAV
Sbjct: 71 TGFTLPPGPGLPRPGGKHGYRAEVTAV 97
>10_08_0694 - 19929918-19930292,19930633-19930866
Length = 202
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +1
Query: 412 RRNKSVESLQINVQRLKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAP 591
R N + + + + K LI+ P G +VL+G E++ K A ++ L +++
Sbjct: 54 RSNPVHKKIPVLLHHGKPIAESLIIIPPGIRVLRGSVEEDKDKAAGEMSTALQHLEEAFV 113
Query: 592 K 594
K
Sbjct: 114 K 114
>05_04_0020 -
17199627-17199947,17200129-17200203,17200301-17200384,
17200483-17200562,17201354-17201508,17202602-17203215
Length = 442
Score = 27.5 bits (58), Expect = 9.4
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -1
Query: 437 NDSTDLLRLRGSTAIPIVLAKEGFNPEALISRRVNPLPARTFV**RT-VGQRTTGLR 270
+ ST GSTA LA+ F+ E +SRR LPAR FV + +G + GLR
Sbjct: 73 SSSTPAAAAAGSTAAN-PLAR--FSVEPAVSRRQQQLPARQFVGGKVPLGLKRKGLR 126
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 427 VESLQINVQRLKEYRARLILFPKGKKVLKGEANEEERKLATQL 555
++SL+ VQR+ E R R +L P G ++E R A +
Sbjct: 182 IQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERRLSALNI 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,684,264
Number of Sequences: 37544
Number of extensions: 361333
Number of successful extensions: 851
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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