Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K03
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...   136   1e-32
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    52   5e-07
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score =  136 bits (329), Expect = 1e-32
 Identities = 69/141 (48%), Positives = 92/141 (65%), Gaps = 1/141 (0%)
 Frame = +1

Query: 208 RRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNPSFART 387
           RR+QNR               LR VVRCP  RY+TK R GRGF+L+E++A+G++ + ART
Sbjct: 34  RRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAGISQAQART 93

Query: 388 IGIAVDPRRRNKSVESLQINVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGP 564
           IGIAVD RR NK+ E L+ N  RLKEY+A+LILFP K     KG+++ EE K+A QLRG 
Sbjct: 94  IGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGD 153

Query: 565 LMPVQQTAPKSVARPITDDEK 627
           ++P+  T      R +TD E+
Sbjct: 154 VLPLSHTITFDEPRQVTDAER 174


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 25/54 (46%), Positives = 32/54 (59%)
 Frame = +1

Query: 208 RRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGFTLREIRASGLN 369
           RR+QNR               LR VVRCP  RY+TK R GRGF+L+E++A+  N
Sbjct: 34  RRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAEEN 87


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
            F13B9.1c protein.
          Length = 1609

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 481  ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITDDEKN 630
            ++F   K VLK     + +  A   +GPL+P  Q+AP +V   IT   +N
Sbjct: 879  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIEN 927


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
            F13B9.1b protein.
          Length = 1614

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 481  ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITDDEKN 630
            ++F   K VLK     + +  A   +GPL+P  Q+AP +V   IT   +N
Sbjct: 879  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIEN 927


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
            F13B9.1a protein.
          Length = 1632

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 481  ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITDDEKN 630
            ++F   K VLK     + +  A   +GPL+P  Q+AP +V   IT   +N
Sbjct: 901  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIEN 949


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 282 CSLPYCALSYKSSCRQRIYPT 344
           CS P C  S +SSC+Q   PT
Sbjct: 204 CSTPICIQSCQSSCQQACQPT 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,331,604
Number of Sequences: 27780
Number of extensions: 287892
Number of successful extensions: 619
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)