Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_K03
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   1.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 413  LRGSTAIPIVLAKEGFNPEALISRRVNP 330
            LRG TA  I++  E   PE  + R + P
Sbjct: 1153 LRGRTAQLIIVQAENAYPEVELDRELRP 1180


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 94  LVNSFKWVRGLYESQWPFPKDWERFWEEL 180
           +V  F  +  + E++W F  DW   W  L
Sbjct: 97  VVMPFSAIYEVLENRWLFTTDWCDVWRSL 125


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 556 RGPLMPVQQTAPKSVA 603
           RG  +PV+ TAP+++A
Sbjct: 796 RGGKIPVRWTAPEAIA 811


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 430 ESLQINVQRLKEYRARLILFPKGKKVLKGE 519
           +S +IN++R+K+   +L  +      LKGE
Sbjct: 492 KSSRINIERMKQVYQQLNKYRGNGVSLKGE 521


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,759
Number of Sequences: 438
Number of extensions: 3959
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)