Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_J24
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 189 2e-49
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 74 2e-14
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 50 3e-07
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 43 3e-05
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 43 3e-05
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 37 0.002
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi... 30 0.19
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 29 0.58
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 25 5.4
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 25 5.4
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo... 25 7.1
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr... 25 7.1
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 7.1
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 25 7.1
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.4
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.4
>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 204
Score = 189 bits (461), Expect = 2e-49
Identities = 84/149 (56%), Positives = 116/149 (77%)
Frame = +1
Query: 88 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 267
MSI+ YNGG+ VAM G++CVAIA+D R G+Q+ +++ NFPKVF MG Y+GL GLATD
Sbjct: 1 MSIMEYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDV 60
Query: 268 QTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPY 447
QT+ + ++++NLY+ +E R ++PKTF+ ++S+ LYEKRFGPYF PV+AG+ DNTP+
Sbjct: 61 QTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVS-NDNTPF 119
Query: 448 VCNMDLIGCPNEPEDFVVSGTCSEQLYGM 534
+C D IGC + EDF+VSGT +EQLYGM
Sbjct: 120 ICGFDSIGCIDFAEDFIVSGTATEQLYGM 148
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 73.7 bits (173), Expect = 2e-14
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Frame = +1
Query: 106 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNF-PKVFQMGPTLYVGLPGLATDTQTVLQ 282
NGG VA+ G +A D R + ++T F P+V ++G L +G G D +++
Sbjct: 12 NGGTTVAIAGDGFAILAGDTR-SVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVK 70
Query: 283 RLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLD 426
R++ R++LY R M ++ + M+ LLY KRF PY++ +AG+D
Sbjct: 71 RIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGID 118
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 49.6 bits (113), Expect = 3e-07
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Frame = +1
Query: 109 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 288
G +V+A+K D V IA D + + ++ ++G VG G +D Q + QRL
Sbjct: 43 GSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQI-QRL 101
Query: 289 KFRMNLYE--LKENRIMKPKTFSAMLSNLLYEKR--FGPYFIEPVIAGLDPYDNTPYVCN 456
++ + E + ++P LS +LY +R PY+ + ++AG+D + PYV
Sbjct: 102 LEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAF 161
Query: 457 MDLIG 471
DL G
Sbjct: 162 ADLRG 166
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 43.2 bits (97), Expect = 3e-05
Identities = 23/92 (25%), Positives = 45/92 (48%)
Frame = +1
Query: 109 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 288
G + A++ +D V +A D R + A + K+ Q+ ++ G A DTQTV L
Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83
Query: 289 KFRMNLYELKENRIMKPKTFSAMLSNLLYEKR 384
K+ +++Y ++ T + + S + Y+ +
Sbjct: 84 KYYLSMYRIQFGHDPSVHTAATLASEMCYQNK 115
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 42.7 bits (96), Expect = 3e-05
Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Frame = +1
Query: 109 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 288
G +A++G +C+ I +++ + Q VS NF K+ + + + GL D + ++ +
Sbjct: 30 GTTAIALRGNECIVIGVERKNVPKLQNVS-NFQKIAMVDNHVCLAFAGLNADARILIDKA 88
Query: 289 KFRMNLYELKENRIMKPKTFSAMLSNLL--YEKRFG--PYFIEPVIAGLDPYDNTPYVCN 456
+ ++L + + + ++ + Y + G P+ + +IAG D DNTP V
Sbjct: 89 RVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQ 148
Query: 457 MDLIGCPN 480
+ G N
Sbjct: 149 TEPAGIYN 156
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 37.1 bits (82), Expect = 0.002
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Frame = +1
Query: 106 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQR 285
+G +A + Q + + D R S KV ++ P L L G A D Q
Sbjct: 60 HGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETV 119
Query: 286 LKFRMNLYELKENRIMKPKTFSAMLSNLLYE-KRFG 390
L L++L+ ++ S +LSN+ Y K +G
Sbjct: 120 LGMECRLHQLRNKELISVSAASKILSNITYSYKGYG 155
>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 30.3 bits (65), Expect = 0.19
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -1
Query: 510 CSRHYKILGLI-GATDQIHITNIWS 439
CSR+Y+ LI GATD H +IWS
Sbjct: 194 CSRYYRAPELIFGATDYTHAIDIWS 218
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 28.7 bits (61), Expect = 0.58
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 112 GAVVAMKGQD-CVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLAT 261
GA+ +D VA A D G+ S + +VF++G L VG+ G T
Sbjct: 407 GALFKFDTEDEVVAWANDSPVGLAGYLFSKDISRVFRVGEALQVGMVGCNT 457
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/49 (22%), Positives = 23/49 (46%)
Frame = -2
Query: 272 VCVSVARPGSPTYNVGPI*NTLGKLVETVWAWIPKRLSVAIATQSWPFI 126
+C +V ++ + T G +VE +W IP + + +A S+ +
Sbjct: 52 ICKAVIEYNYNSHPIAAKYTTHGSIVEFIWTLIPALILILVALPSFKLL 100
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +1
Query: 304 LYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPY 447
+Y K N+ + + S +L + + +EP A L P TPY
Sbjct: 583 IYSYKRNKNTEVQQRSVEFHLILNDSKLSKTILEPTPAPLPPPRTTPY 630
>SPBC4B4.01c |||fumble family pantothenate kinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 7.1
Identities = 8/19 (42%), Positives = 17/19 (89%)
Frame = +1
Query: 163 KRFGIQAQTVSTNFPKVFQ 219
+RFG+++ T++++F KVF+
Sbjct: 281 ERFGLKSTTIASSFGKVFR 299
>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 247 PGLATDTQTVLQRLKFRMN--LYELKENRIMKPK 342
P L D+ L +L R N +YE K R++KPK
Sbjct: 69 PFLNKDSGVDLLKLHSRSNSRIYEAKPKRVIKPK 102
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = -2
Query: 413 ITGSMKYGPNLFSY----NKFDSIAEKVLGFIILFSFSSYKF 300
I S+KYG LFS+ N F + +++ ++SS+ F
Sbjct: 105 ILSSLKYGSTLFSWISVANAFGLLLLRLISIYDFLTYSSWSF 146
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 25.0 bits (52), Expect = 7.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 240 NI*CWSHLKHFRKVG 196
N+ W+H+KH KVG
Sbjct: 172 NVQMWAHVKHIMKVG 186
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 164 NALVSRPKLSPPTFLKCFRWDQHYMLGSLVL 256
+AL+ P + +FL + D+H MLG L L
Sbjct: 357 SALIVAPFILASSFLSRWLEDRHIMLGGLFL 387
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 24.6 bits (51), Expect = 9.4
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Frame = +1
Query: 220 MGPTLYVGLPGL--ATDTQTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLY---EKR 384
M PT YVGLPG +T + LK + + + +++N+L+ EKR
Sbjct: 673 MCPTKYVGLPGFPRLASGKTDRKALKIQFSASDKHSTDFSSFNQSELLVANVLHEICEKR 732
Query: 385 FGPY-----FIEPVIAGLDPYDNTPYVCNMDLIGCPNEPEDFVVS 504
F F GLD D +V + +G P + S
Sbjct: 733 FNSVVSISRFSSIFDLGLDSLDIVYFVRKIRSLGFEANPSIVLTS 777
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,605
Number of Sequences: 5004
Number of extensions: 51575
Number of successful extensions: 139
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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