Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_J24
(534 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0903 - 25816395-25816493,25816695-25816779,25817390-258174... 193 7e-50
02_01_0614 - 4599035-4599083,4599209-4599303,4599410-4599494,460... 186 1e-47
08_02_1353 + 26335306-26335448,26336025-26336106,26336322-263364... 64 5e-11
09_04_0656 + 19267392-19267432,19267530-19267637,19269114-192691... 63 1e-10
09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341 40 0.001
08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323 39 0.002
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 39 0.003
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 37 0.012
07_01_1106 - 10187609-10190041,10190292-10191932 30 1.3
09_03_0065 + 12013715-12013720,12013899-12014612 28 4.1
03_01_0398 + 3092577-3093857 28 5.4
04_04_0601 + 26532487-26532553,26532732-26532797,26533440-265335... 27 9.5
>06_03_0903 -
25816395-25816493,25816695-25816779,25817390-25817479,
25818566-25818673,25818771-25818952,25819032-25819216,
25820812-25820971
Length = 302
Score = 193 bits (471), Expect = 7e-50
Identities = 91/148 (61%), Positives = 114/148 (77%)
Frame = +1
Query: 88 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 267
MSI YNG AVVAM G++C AIA+D+R G+Q QTV+T+F +VF++ LY+GL GLATD
Sbjct: 114 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDA 173
Query: 268 QTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPY 447
QT+ QRL FR LY+L+E R MKP+TF++++S LLYEKRFGPYF +PVIAGL DN P+
Sbjct: 174 QTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGE-DNEPF 232
Query: 448 VCNMDLIGCPNEPEDFVVSGTCSEQLYG 531
+C MD IG +DFVVSGT SE LYG
Sbjct: 233 ICTMDCIGAKELAKDFVVSGTASESLYG 260
>02_01_0614 -
4599035-4599083,4599209-4599303,4599410-4599494,
4600107-4600196,4600772-4600879,4600983-4601197
Length = 213
Score = 186 bits (452), Expect = 1e-47
Identities = 87/148 (58%), Positives = 111/148 (75%)
Frame = +1
Query: 88 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 267
+ I YNG AVVAM G++C AIA+D+R G+Q QTV+T+F +VF++ LY+GL GLATD
Sbjct: 10 LQIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDA 69
Query: 268 QTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPY 447
QT+ QRL FR LY+L+E R MKP+ F++++S LLYEKRFGPYF +PVIAGL D P+
Sbjct: 70 QTLYQRLVFRHKLYQLREERDMKPQAFASLVSALLYEKRFGPYFCQPVIAGLGDNDE-PF 128
Query: 448 VCNMDLIGCPNEPEDFVVSGTCSEQLYG 531
+C MD IG +DFVVSGT SE LYG
Sbjct: 129 ICTMDCIGAKELAKDFVVSGTASESLYG 156
>08_02_1353 +
26335306-26335448,26336025-26336106,26336322-26336451,
26336486-26336548,26336549-26336691,26336827-26336913,
26337014-26337088
Length = 240
Score = 64.5 bits (150), Expect = 5e-11
Identities = 34/114 (29%), Positives = 53/114 (46%)
Frame = +1
Query: 85 KMSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATD 264
+ + NGG VA+ G D +A D R + +S + K+ + + G D
Sbjct: 3 RFEVYENNGGTCVAVAGADYCVVAADTRLSVGYSILSRDSSKIAHLADKCVLASSGFQGD 62
Query: 265 TQTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLD 426
+ + + L + LYE N+ M + +LSN LY KRF PY+ V+ GLD
Sbjct: 63 VKALQRNLTAKELLYEHNHNKKMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLD 116
>09_04_0656 +
19267392-19267432,19267530-19267637,19269114-19269195,
19269637-19269766,19269882-19270024,19270198-19270284,
19270384-19270458
Length = 221
Score = 63.3 bits (147), Expect = 1e-10
Identities = 33/107 (30%), Positives = 53/107 (49%)
Frame = +1
Query: 106 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQR 285
NGG VA+ G D +A D R + ++ + K+ ++ + G D + + +
Sbjct: 12 NGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKALHKN 71
Query: 286 LKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLD 426
L R LY+ + N+ M + +LSN LY KRF PY+ V+ GLD
Sbjct: 72 LAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLD 118
>09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341
Length = 249
Score = 40.3 bits (90), Expect = 0.001
Identities = 29/139 (20%), Positives = 60/139 (43%), Gaps = 4/139 (2%)
Frame = +1
Query: 67 IFNQDYKMSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGL 246
+F +Y + + G A V ++G D V + +K+ + Q S + K+ + + +
Sbjct: 17 LFQVEYALEAVR-KGNAAVGVRGSDTVVLGVEKKSTPKLQD-SRSVRKIASLDTHIALAC 74
Query: 247 PGLATDTQTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLL--YEKRFG--PYFIEPVI 414
GL D + ++ R + + L + + + ++ L Y + G P+ + +I
Sbjct: 75 AGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLI 134
Query: 415 AGLDPYDNTPYVCNMDLIG 471
G DPY + P + D G
Sbjct: 135 VGFDPYTDKPALYQTDPSG 153
>08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323
Length = 319
Score = 39.1 bits (87), Expect = 0.002
Identities = 29/139 (20%), Positives = 59/139 (42%), Gaps = 4/139 (2%)
Frame = +1
Query: 67 IFNQDYKMSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGL 246
+F +Y + + G A V ++G D V + +K+ + Q S + K+ + + +
Sbjct: 87 LFQVEYALEAVR-KGNAAVGVRGTDTVVLGVEKKSTPKLQD-SRSMRKIASLDTHIALAC 144
Query: 247 PGLATDTQTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLL--YEKRFG--PYFIEPVI 414
GL D + ++ R + + L + + + ++ L Y + G P+ + +I
Sbjct: 145 AGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLI 204
Query: 415 AGLDPYDNTPYVCNMDLIG 471
G DPY P + D G
Sbjct: 205 VGFDPYTEKPALYQTDPSG 223
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 38.7 bits (86), Expect = 0.003
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 3/140 (2%)
Frame = +1
Query: 37 NNIRKNILQ*IFNQDYKMSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVF 216
+N +N + + + KM G +V + QD V + D R N K+
Sbjct: 16 DNCARNAM--LVEKGLKMPGFLKTGTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIH 73
Query: 217 QMGPTLYVGLPGLATDTQTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPY 396
M P +Y G A DT+ V + ++ L+ R + T +L + L+ + G
Sbjct: 74 YMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYATGRESRVVTSLTLLKSHLFSYQ-GHV 132
Query: 397 FIEPVIAGLD---PYDNTPY 447
V+ G+D P+ +T Y
Sbjct: 133 SAALVLGGVDVTGPHLHTVY 152
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 36.7 bits (81), Expect = 0.012
Identities = 29/142 (20%), Positives = 62/142 (43%)
Frame = +1
Query: 109 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 288
G +V + V +A D R + K+ Q+ +YV G A DTQ + + +
Sbjct: 25 GTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQVISEYV 84
Query: 289 KFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPYVCNMDLI 468
++ ++ + ++ + K + ++ L Y+ + ++ G D Y+ + ++ L
Sbjct: 85 RYFLHQHTIQLGQPATVKVAANLIRLLAYQNK-NMLQAGMIVGGWDKYEG-GQIFSVPLG 142
Query: 469 GCPNEPEDFVVSGTCSEQLYGM 534
G + F + G+ S LYG+
Sbjct: 143 GTILR-QPFAIGGSGSSYLYGL 163
>07_01_1106 - 10187609-10190041,10190292-10191932
Length = 1357
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -1
Query: 525 QLFRACSRHYKILGLIGATD-QIHITNIWSVIVRIKTSYHWFNEIWSES 382
+LF R IL +G +D Q+HI ++ ++VR++T F + S S
Sbjct: 165 RLFIHSKRRMHILPTLGYSDPQVHINRLFQLLVRVRTMVSSFGKSGSPS 213
>09_03_0065 + 12013715-12013720,12013899-12014612
Length = 239
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 96 TSVQWRCSCCDEGPRLCGYRYGQTLWYPGPNCLHQLS 206
+S +WRC CC E YR G +CL +++
Sbjct: 114 SSARWRCDCCGERSDYWVYRSGSGNVTLNVSCLKKMA 150
>03_01_0398 + 3092577-3093857
Length = 426
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 457 MDLIGCPNEPEDFVVSGTCSEQLY 528
++L P++P DFVVSG+ S++ +
Sbjct: 146 LNLCASPSDPADFVVSGSWSDKAF 169
>04_04_0601 +
26532487-26532553,26532732-26532797,26533440-26533566,
26533861-26533975,26534377-26534436
Length = 144
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +1
Query: 400 IEPVIAGLDPYDNTPYVCNMD---LIGC-PNEPEDFVVSGTCSE 519
+E ++ G +NT Y+CNMD ++ C E + V SG S+
Sbjct: 6 LEVLLVGAKGLENTDYLCNMDPYAVLKCRSQEQKSSVASGKGSD 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,216,774
Number of Sequences: 37544
Number of extensions: 312372
Number of successful extensions: 675
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -