Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_J24
(534 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 169 1e-42
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 47 7e-06
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 47 7e-06
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 39 0.002
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 38 0.005
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 34 0.074
Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical pr... 31 0.52
AF068709-6|AAC19249.1| 319|Caenorhabditis elegans Serpentine re... 30 0.91
Z78065-5|CAB01515.1| 954|Caenorhabditis elegans Hypothetical pr... 29 1.6
U64855-3|AAB04982.1| 447|Caenorhabditis elegans Hypothetical pr... 29 2.8
AL023842-5|CAA19519.1| 393|Caenorhabditis elegans Hypothetical ... 29 2.8
AF024491-4|AAZ82855.1| 365|Caenorhabditis elegans Hypothetical ... 29 2.8
AF024491-3|AAB70311.2| 420|Caenorhabditis elegans Hypothetical ... 29 2.8
U39646-4|AAA80370.1| 215|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z66562-3|CAD44123.1| 485|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z66562-2|CAB60289.1| 110|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z66562-1|CAA91464.1| 519|Caenorhabditis elegans Hypothetical pr... 27 6.4
AF040661-13|AAG24216.1| 351|Caenorhabditis elegans Hypothetical... 27 6.4
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 169 bits (410), Expect = 1e-42
Identities = 79/149 (53%), Positives = 104/149 (69%)
Frame = +1
Query: 88 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 267
MSI++Y GG VVAM G +CV IA+D R G Q T++T+ KV ++ +YVGL G +D
Sbjct: 1 MSIMSYTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDA 60
Query: 268 QTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPY 447
+TVL+++ FR NLYEL+ENR +KP+ S M+SNL Y+ RFG YF EP++AGLD N PY
Sbjct: 61 RTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDD-TNKPY 119
Query: 448 VCNMDLIGCPNEPEDFVVSGTCSEQLYGM 534
+C MD IGC + P DFV GT E L G+
Sbjct: 120 ICCMDTIGCVSAPRDFVAVGTGQEYLLGV 148
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 47.2 bits (107), Expect = 7e-06
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Frame = +1
Query: 109 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQ-MGPTLYVGLPGLATDTQTVLQR 285
GG+ A+ G++ +A+D R + T + Q + + + G D + +
Sbjct: 51 GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110
Query: 286 LKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPYVCNMDL 465
L+ R++ Y M + +LS LY +RF PY+ ++AG+D + V + D
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHGKGA-VFSYDP 169
Query: 466 IGC 474
IGC
Sbjct: 170 IGC 172
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 47.2 bits (107), Expect = 7e-06
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Frame = +1
Query: 109 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQ-MGPTLYVGLPGLATDTQTVLQR 285
GG+ A+ G++ +A+D R + T + Q + + + G D + +
Sbjct: 51 GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110
Query: 286 LKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLDPYDNTPYVCNMDL 465
L+ R++ Y M + +LS LY +RF PY+ ++AG+D + V + D
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHGKGA-VFSYDP 169
Query: 466 IGC 474
IGC
Sbjct: 170 IGC 172
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 39.1 bits (87), Expect = 0.002
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Frame = +1
Query: 67 IFNQDYKMSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGL 246
+F +Y + G V ++G+DC+ I +K+ I A K+ + + +
Sbjct: 17 LFQVEYAQEAVK-KGSTAVGVRGKDCIVIGVEKK-SIPALQDDRTIRKIHMIDDHVMLAF 74
Query: 247 PGLATDTQTVLQRLKFRMNLYELKENRIMKPKTFSAMLSNLLYEKRF------GPYFIEP 408
GL+ D + ++ R + Y+L + S ++N ++RF P+ I
Sbjct: 75 AGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANT--KQRFTQSPGRRPFGISM 132
Query: 409 VIAGLDPYDNTP 444
+I G D +D TP
Sbjct: 133 LIGGFD-HDGTP 143
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/92 (25%), Positives = 40/92 (43%)
Frame = +1
Query: 109 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 288
G ++AM+ V + TD R + S K+ + + V G A DTQ +
Sbjct: 23 GTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIA 82
Query: 289 KFRMNLYELKENRIMKPKTFSAMLSNLLYEKR 384
K+ +++Y + EN+ + S + LY R
Sbjct: 83 KYHIDVYTMTENKPVTIYRSSQIFRQFLYNYR 114
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 33.9 bits (74), Expect = 0.074
Identities = 23/94 (24%), Positives = 38/94 (40%)
Frame = +1
Query: 145 VAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRLKFRMNLYELKEN 324
+ +A D R S + K+ +G + + G A D Q + + LYEL+E
Sbjct: 83 IIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREK 142
Query: 325 RIMKPKTFSAMLSNLLYEKRFGPYFIEPVIAGLD 426
+ S +N LY R + ++AG D
Sbjct: 143 TSITVSAASKYFANTLYGYRGQGLSVGSMVAGYD 176
>Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical
protein F39H11.5 protein.
Length = 236
Score = 31.1 bits (67), Expect = 0.52
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Frame = +1
Query: 109 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVLQRL 288
G +V+A++ + V + TD+ N + +++ + + G D LQ +
Sbjct: 17 GTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGGDHADFHW-LQNV 75
Query: 289 KFRMNLYELKENRIMKPKTFSAMLSNLLYEKR--FGPYFIEPVIAGLDPYDNTPYVCNMD 462
R L + ++ + PK L++LLY KR P + V+AG++ + +
Sbjct: 76 IERQVLLWKRFDQDIGPKALHGYLTSLLYAKRCKMNPVWNTLVVAGVEEEEKNNKETSTP 135
Query: 463 LIG 471
IG
Sbjct: 136 FIG 138
>AF068709-6|AAC19249.1| 319|Caenorhabditis elegans Serpentine
receptor, class t protein27 protein.
Length = 319
Score = 30.3 bits (65), Expect = 0.91
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 527 YNCSEHVPDTTKSSGSLGQPIKSIL-QTYGVL 435
YNCS H P+ +PI I+ TYG+L
Sbjct: 16 YNCSAHTPEEWSELNGYKRPIAGIIDMTYGIL 47
>Z78065-5|CAB01515.1| 954|Caenorhabditis elegans Hypothetical
protein T09E8.2 protein.
Length = 954
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = -1
Query: 303 IHSEF*SLKHGLCVSCKTREPNI*CWSHLKHFRKVGGDSLGLDTKAFVRSDSHTVLALHR 124
IHS+ ++K L KT P + C H + S+ + + S VL H
Sbjct: 667 IHSDKMTIKKALASLAKTNRPALICNIHFPD--GIDPFSIIAERRLMYGVQSECVLCAHA 724
Query: 123 NNCTSIV 103
N+CT+++
Sbjct: 725 NDCTAMI 731
>U64855-3|AAB04982.1| 447|Caenorhabditis elegans Hypothetical
protein ZK742.3 protein.
Length = 447
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 124 AMKGQDCVAIATDKRFGIQAQTVSTN 201
AMK +AIA G+QAQT TN
Sbjct: 113 AMKSDGALAIAQTNHIGVQAQTAYTN 138
>AL023842-5|CAA19519.1| 393|Caenorhabditis elegans Hypothetical
protein Y44A6D.5 protein.
Length = 393
Score = 28.7 bits (61), Expect = 2.8
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = +1
Query: 259 TDTQTVLQRLKFRMNLYEL-KENRIMK--PKTFS-AMLSNLLYEKRFGPYFIEPVIAGLD 426
TD+ +L + R ++ EL +E +MK K F+ A LS ++EKR +F+ A +
Sbjct: 279 TDSGLLLPGIT-RQSIVELAQEMNLMKVSEKNFTMAQLSRAVHEKRVHEFFVSGTAANVG 337
Query: 427 PYDNTPYVCNMDL 465
P Y C+ +L
Sbjct: 338 PVSEIVY-CDKEL 349
>AF024491-4|AAZ82855.1| 365|Caenorhabditis elegans Hypothetical
protein C24A1.2b protein.
Length = 365
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = -2
Query: 254 RPGSPTYNVGPI*NTLGKLVETVWAWI--PKRLSVAIATQSWPFIATTAPPLYAS 96
RP PT + + + T+W WI + S A ATQ W A P AS
Sbjct: 98 RPRPPTVPLPTVTQQIPWQTSTIWPWIQQAQSASTADATQRWLQSALLCPTTSAS 152
>AF024491-3|AAB70311.2| 420|Caenorhabditis elegans Hypothetical
protein C24A1.2a protein.
Length = 420
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = -2
Query: 254 RPGSPTYNVGPI*NTLGKLVETVWAWI--PKRLSVAIATQSWPFIATTAPPLYAS 96
RP PT + + + T+W WI + S A ATQ W A P AS
Sbjct: 153 RPRPPTVPLPTVTQQIPWQTSTIWPWIQQAQSASTADATQRWLQSALLCPTTSAS 207
>U39646-4|AAA80370.1| 215|Caenorhabditis elegans Hypothetical
protein F47B7.6 protein.
Length = 215
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 515 EHVPDTTKSSGSLGQPIKSILQTYGV 438
+H+P +SS S+G P SILQ G+
Sbjct: 134 DHMPHDYQSSNSMGYPTPSILQVGGM 159
>Z66562-3|CAD44123.1| 485|Caenorhabditis elegans Hypothetical
protein F42E11.2c protein.
Length = 485
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Frame = -1
Query: 456 ITNIWSVIVRIKTSYHWFNEI----WSESLF 376
+ N +SVI R+ +HW N++ WS F
Sbjct: 7 LINFYSVIPRLNFKFHWTNDVFNLEWSSEYF 37
>Z66562-2|CAB60289.1| 110|Caenorhabditis elegans Hypothetical
protein F42E11.2b protein.
Length = 110
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Frame = -1
Query: 456 ITNIWSVIVRIKTSYHWFNEI----WSESLF 376
+ N +SVI R+ +HW N++ WS F
Sbjct: 7 LINFYSVIPRLNFKFHWTNDVFNLEWSSEYF 37
>Z66562-1|CAA91464.1| 519|Caenorhabditis elegans Hypothetical
protein F42E11.2a protein.
Length = 519
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Frame = -1
Query: 456 ITNIWSVIVRIKTSYHWFNEI----WSESLF 376
+ N +SVI R+ +HW N++ WS F
Sbjct: 7 LINFYSVIPRLNFKFHWTNDVFNLEWSSEYF 37
>AF040661-13|AAG24216.1| 351|Caenorhabditis elegans Hypothetical
protein W10G11.7 protein.
Length = 351
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 131 RAKTVWLSL-RTNALVSRPKLSPPTFLKCFRWDQHYMLGSLVLQLTHK 271
R+ +VW+ + RT A V++P T F W + G+ TH+
Sbjct: 122 RSASVWIGIQRTKACVNKPITVNCTITNSFEWTDNSTTGTDGFLFTHE 169
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,484,081
Number of Sequences: 27780
Number of extensions: 289470
Number of successful extensions: 658
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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