Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_J22
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267...    68   7e-12
01_06_1209 + 35427160-35427318,35427436-35427501,35427737-354278...    55   4e-08
03_02_0673 - 10328994-10329281                                         41   0.001
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857...    29   4.0  
04_03_0318 + 14296001-14296630                                         28   5.2  
04_03_0317 + 14292003-14292632                                         28   5.2  
04_03_0319 + 14311530-14312159                                         28   6.9  
07_01_0807 + 6323885-6324264,6324369-6324542,6324636-6324746,632...    27   9.2  

>03_02_0672 -
           10325935-10326150,10326308-10326400,10326568-10326708,
           10326828-10326893,10327099-10327359
          Length = 258

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
 Frame = +3

Query: 369 KQDKVKVRVYYEALCPDSKHFFIKHLEPV-TEKLSEFLSVTLVPYGKAKTKFHDGKYYFT 545
           K  KV V +YYE+LCP S  F +  L  V  + L + + ++LVPYG A+ K  DGK    
Sbjct: 28  KGGKVDVALYYESLCPYSAMFVVGSLAKVFRDGLLDAVDLSLVPYGNARVK--DGKISCQ 85

Query: 546 CQHGEVECYANKIHACSIDA 605
            +HG  EC+ N + AC+IDA
Sbjct: 86  VEHGSEECFLNTVEACAIDA 105


>01_06_1209 +
           35427160-35427318,35427436-35427501,35427737-35427877,
           35428342-35428434,35428530-35428646,35428890-35429054
          Length = 246

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +3

Query: 393 VYYEALCPDSKHFFIKHLEPV-TEKLSEFLSVTLVPYGKAKTKFHDGKYYFTCQHGEVEC 569
           VYYE LCP    F +  L  +  + LS  + + LVP+G  +    DG    TCQHGE EC
Sbjct: 3   VYYETLCPFCSGFVVNDLARIFRDGLSPVVDLRLVPFGNGRVS-PDGS--ITCQHGEEEC 59

Query: 570 YANKIHACSI 599
             N I AC I
Sbjct: 60  QLNAIEACVI 69


>03_02_0673 - 10328994-10329281
          Length = 95

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 375 DKVKVRVYYEALCPDSKHFFIKHLEPVTEK-LSEFLSVTLVPYGKA 509
           +KV + +YYE LCP    F + HL  + E  + + + + LVPYG A
Sbjct: 37  EKVPLALYYETLCPYCSRFIVNHLAGIFEDGIVDAVDLRLVPYGNA 82


>01_06_0276 -
           28084746-28085003,28085103-28085357,28085531-28085798,
           28085948-28086253,28086369-28086643,28087034-28087252,
           28087486-28089015,28089236-28089397,28089512-28089666,
           28090195-28091064,28091363-28091832,28091917-28091981,
           28092105-28092448,28092531-28092710,28092817-28092920,
           28093053-28093162,28093648-28093744,28094138-28094238,
           28094324-28094476,28094561-28094674,28094795-28094884,
           28094960-28095307
          Length = 2157

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 441 HLEPVTEKLSEFLSVTLVPY-GKAKTKFHDGKY 536
           ++EP  + L EFLS  + P+ G A   F DG+Y
Sbjct: 406 NMEPEKKALYEFLSALMEPWDGPALISFTDGRY 438


>04_03_0318 + 14296001-14296630
          Length = 209

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/29 (37%), Positives = 22/29 (75%)
 Frame = +3

Query: 432 FIKHLEPVTEKLSEFLSVTLVPYGKAKTK 518
           F+K L+ +T+K+SEF ++ L+ YG+ + +
Sbjct: 21  FMKSLKGLTKKVSEFATLFLMVYGEVEVQ 49


>04_03_0317 + 14292003-14292632
          Length = 209

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/29 (37%), Positives = 22/29 (75%)
 Frame = +3

Query: 432 FIKHLEPVTEKLSEFLSVTLVPYGKAKTK 518
           F+K L+ +T+K+SEF ++ L+ YG+ + +
Sbjct: 21  FMKSLKGLTKKVSEFATLFLMVYGEVEVQ 49


>04_03_0319 + 14311530-14312159
          Length = 209

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +3

Query: 432 FIKHLEPVTEKLSEFLSVTLVPYGKAKTK 518
           F KHL+ + +K+SEF ++ L+ YG+ + +
Sbjct: 21  FRKHLKGLMKKVSEFATLFLMVYGEVEVQ 49


>07_01_0807 +
           6323885-6324264,6324369-6324542,6324636-6324746,
           6324813-6324906
          Length = 252

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -3

Query: 209 HYK*IWFVSYFTT*RNYYFLFN*NTCKLKWHFIMDTK--FYDNILSLIKTQPVQIG 48
           HYK    + Y T     + LFN   C +  +  MD K   +D +  LI +  + +G
Sbjct: 173 HYKTFILLPYNTEFHWVFLLFNLEACTVNVYDSMDKKESMFDKVFELIDSFKLHVG 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,067,782
Number of Sequences: 37544
Number of extensions: 249751
Number of successful extensions: 431
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)