Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_J22
(625 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81534-4|CAB04345.1| 277|Caenorhabditis elegans Hypothetical pr... 71 9e-13
AF077534-7|AAK71376.1| 319|Caenorhabditis elegans Prion-like-(q... 64 8e-11
L16622-5|ABC71836.1| 263|Caenorhabditis elegans Hypothetical pr... 58 4e-09
L16622-4|AAA27914.1| 323|Caenorhabditis elegans Hypothetical pr... 58 4e-09
Z37093-1|CAA85467.1| 264|Caenorhabditis elegans Hypothetical pr... 54 8e-08
Z32683-12|CAA83624.2| 186|Caenorhabditis elegans Hypothetical p... 45 4e-05
AL034393-2|CAA22309.1| 220|Caenorhabditis elegans Hypothetical ... 43 2e-04
Z37093-2|CAA85464.1| 218|Caenorhabditis elegans Hypothetical pr... 38 0.004
AL032630-9|CAA21565.1| 369|Caenorhabditis elegans Hypothetical ... 29 2.0
Z82068-1|CAB04897.1| 149|Caenorhabditis elegans Hypothetical pr... 29 3.6
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 27 8.2
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ... 27 8.2
>Z81534-4|CAB04345.1| 277|Caenorhabditis elegans Hypothetical
protein F37H8.5 protein.
Length = 277
Score = 70.5 bits (165), Expect = 9e-13
Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +3
Query: 366 HKQDKVKVRVYYEALCPDSKHFFIKHLEPVTEK-LSEFLSVTLVPYGKAKTKFHDGKYYF 542
H Q K+ + V EALCPD ++F K L P+ K + ++++ LVP+G AK DG
Sbjct: 72 HNQ-KINITVLIEALCPDCQNFLTKQLYPIVFKNFANYVNIELVPFGNAKV-LEDGT--I 127
Query: 543 TCQHGEVECYANKIHACSIDALNNMT 620
CQHGE EC NK C ID++ + +
Sbjct: 128 KCQHGEEECSINKFEGCFIDSMQDQS 153
>AF077534-7|AAK71376.1| 319|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 48
protein.
Length = 319
Score = 64.1 bits (149), Expect = 8e-11
Identities = 30/82 (36%), Positives = 47/82 (57%)
Frame = +3
Query: 363 KHKQDKVKVRVYYEALCPDSKHFFIKHLEPVTEKLSEFLSVTLVPYGKAKTKFHDGKYYF 542
+H++ +K+ + YEALCP + F L V + L + LVP+G ++ DG F
Sbjct: 135 RHRRQPIKITLIYEALCPYCQKFIANQLGSVFNQFQGQLILELVPWGNSRI-MRDGS--F 191
Query: 543 TCQHGEVECYANKIHACSIDAL 608
+C HG+ EC AN++ +C ID L
Sbjct: 192 SCNHGQKECDANRLQSCVIDIL 213
>L16622-5|ABC71836.1| 263|Caenorhabditis elegans Hypothetical
protein C02D5.2b protein.
Length = 263
Score = 58.4 bits (135), Expect = 4e-09
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +3
Query: 381 VKVRVYYEALCPDSKHFFIKHLEPVTEKLSEF--LSVTLVPYGKAKTKFHDGKYYFTCQH 554
VK+ VY EA CPD+ FF + L+ + L + + ++P+GKA+ + CQH
Sbjct: 79 VKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGNDFECQCQH 138
Query: 555 GEVECYANKIHACSID 602
G EC N++ C ID
Sbjct: 139 GPTECQINQLMNCVID 154
>L16622-4|AAA27914.1| 323|Caenorhabditis elegans Hypothetical
protein C02D5.2a protein.
Length = 323
Score = 58.4 bits (135), Expect = 4e-09
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +3
Query: 381 VKVRVYYEALCPDSKHFFIKHLEPVTEKLSEF--LSVTLVPYGKAKTKFHDGKYYFTCQH 554
VK+ VY EA CPD+ FF + L+ + L + + ++P+GKA+ + CQH
Sbjct: 139 VKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGNDFECQCQH 198
Query: 555 GEVECYANKIHACSID 602
G EC N++ C ID
Sbjct: 199 GPTECQINQLMNCVID 214
>Z37093-1|CAA85467.1| 264|Caenorhabditis elegans Hypothetical
protein ZK669.2 protein.
Length = 264
Score = 54.0 bits (124), Expect = 8e-08
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Frame = +3
Query: 360 NKHKQDKVKVRVYYEALCPDSKHFFIKHLEPVTEKL--SEFLSVTLVPYGKAK-TKFHDG 530
++ K + + + E+LCPD+ +F H+ PV L S +++T P+G A + +
Sbjct: 67 SRAKTPPINIEFFGESLCPDTTRYFRNHIMPVWTSLQASSTINITYHPFGLASCRRSAET 126
Query: 531 KYYFTCQHGEVECYANKIHACSIDAL 608
CQHG EC N + AC I L
Sbjct: 127 GIRCNCQHGPAECQLNMLQACVISTL 152
>Z32683-12|CAA83624.2| 186|Caenorhabditis elegans Hypothetical
protein R07E5.4 protein.
Length = 186
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +3
Query: 378 KVKVRVYYEALCPDSKHFFIKHLEPVTEKLSEFLSVTLVPYGKAKTKF-HDGKYYFTCQH 554
+V V ++ E+ CP + + P +++ +VP+GK + ++ ++ TC H
Sbjct: 18 QVNVTIFTESQCPYCTKLLREQIWPFYVNRPGIMNLQIVPFGKGDCTYDYNRNFHCTCMH 77
Query: 555 GEVECYANKIHACSI 599
G EC N++ C+I
Sbjct: 78 GATECDLNRLQNCAI 92
>AL034393-2|CAA22309.1| 220|Caenorhabditis elegans Hypothetical
protein Y18D10A.2 protein.
Length = 220
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +3
Query: 387 VRVYYEALCPDSKHFFIKHLEPVTEKLSEFLSVTL-VPYGKAKTKFH--DGKYYFTCQHG 557
V V+ + CPD+ F L P + LS L + + T H DGKY C HG
Sbjct: 39 VEVFGISRCPDTSKFIHNQLVPFYQNYKGNLSDGLKLDFHAVPTGGHQVDGKYVNRCLHG 98
Query: 558 EVECYANKIHACS 596
+EC NK+ CS
Sbjct: 99 ALECALNKLQMCS 111
>Z37093-2|CAA85464.1| 218|Caenorhabditis elegans Hypothetical
protein ZK669.3 protein.
Length = 218
Score = 38.3 bits (85), Expect = 0.004
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Frame = +3
Query: 375 DKVKVRVYYEALCPDSKHFFIKHLEPVTEKLSEF--LSVTLVPYGKAKTKFHDGK----Y 536
D V + + E C D+ ++ H P+ L ++ PYG KT D +
Sbjct: 29 DMVNIVAFGEGRCSDTSYWMKWHWLPMWRMLGSTGRINFDYHPYG-IKTTCVDSESADDV 87
Query: 537 YFTCQHGEVECYANKIHACSIDALNN 614
C HG EC N++ AC I+AL N
Sbjct: 88 VCDCHHGNRECLLNQLQACVIEALPN 113
>AL032630-9|CAA21565.1| 369|Caenorhabditis elegans Hypothetical
protein Y62H9A.9 protein.
Length = 369
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = -3
Query: 176 TT*RNYYFLFN*NTCKLKWHFIMDTKFY---DNILSLIKT-QPVQIGTKKTYFLF 24
T+ R+ F+F+ NTC++ H ++ F DN L++T +P I KK Y LF
Sbjct: 113 TSKRSDVFVFSLNTCEIHSHGVIRDDFQKLKDNFNLLVRTNRPTDI-YKKKYLLF 166
>Z82068-1|CAB04897.1| 149|Caenorhabditis elegans Hypothetical
protein W04A4.3 protein.
Length = 149
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 525 DGKYYFTCQHGEVECYANKIHACSIDALNNMT 620
+G TC++G +EC NK+ C+ N+T
Sbjct: 86 NGTAVATCENGWLECQLNKLQCCTKKYSRNVT 117
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +3
Query: 468 SEFLSVTLVP-YGKAKTKFHDGKYYFTCQHGEVECYANK 581
S + TL P Y K DG Y F C+ ++CY K
Sbjct: 674 STIFTTTLSPKYAAMCAKRDDGNYGFDCEKYLIKCYNRK 712
>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
protein Y80D3A.2 protein.
Length = 1467
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 426 HFFIKHLEPVTEKLSEFLSVTLVPYGKAKTKF 521
H +H+E + EKL EF + L+ G+ +T++
Sbjct: 997 HSCWRHIEQIFEKLDEFRAFELLRNGRDRTEY 1028
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,701,645
Number of Sequences: 27780
Number of extensions: 274898
Number of successful extensions: 588
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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