Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_J22
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.4  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   9.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   9.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 605 SIYRTSMNFICITFYFSMLTGEVIFSIMEF 516
           ++Y+ ++    +    SML+G VIFS++ F
Sbjct: 310 NVYKDALIVCTVNSCTSMLSGIVIFSVVGF 339


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 605 SIYRTSMNFICITFYFSMLTGEVIFSIMEF 516
           ++Y+ ++    +    SML+G VIFS++ F
Sbjct: 363 NVYKDALIVCTVNSCTSMLSGIVIFSVVGF 392


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 325 SISENFINGLSDKSRNN 275
           S+S N+I+ +S+ + NN
Sbjct: 84  SLSNNYISNISNYNNNN 100


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 334 YWNWKMIDLINT 369
           YWNW   D+I +
Sbjct: 839 YWNWSNQDVIKS 850


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 325 SISENFINGLSDKSRNN 275
           S+S N+I+ +S+ + NN
Sbjct: 322 SLSNNYISNISNYNNNN 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,628
Number of Sequences: 438
Number of extensions: 3413
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)