Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_J21
         (297 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   1.4  
SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces pomb...    25   3.1  
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    24   4.2  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    24   5.5  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    24   5.5  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    23   7.3  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    23   7.3  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    23   7.3  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    23   7.3  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    23   9.6  

>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 93  PPPGNSDGMFGSSISGMFMDKKSANSIRAQIEIIPCKVCGD 215
           PPPG S  MFG S+       K   S+  Q+ I  C  C D
Sbjct: 769 PPPGPSPTMFGRSLENQL---KIEGSVLPQV-IAMCVSCVD 805


>SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 250

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 114 GMFGSSISGMFMDKKSANSIRAQIEIIPCKVC 209
           G FG +I+  F+ +++  S+R Q+ I+   +C
Sbjct: 207 GFFGGAIACYFLWERTMFSLRMQLSILVGIIC 238


>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 156 KSANSIRAQIEIIPCKVC 209
           +  N+I+  IE +PC +C
Sbjct: 252 RDGNTIKYDIEDVPCNIC 269


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 2   PRATHRCRGRNARWANGH 55
           P     C+G N  W+ GH
Sbjct: 139 PLTASTCKGLNGSWSGGH 156


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 198 CKVCGDKSSGVHYGVITCEGCN 263
           C VC    S +   ++ C+GCN
Sbjct: 193 CSVCQRGHSPLSNRIVFCDGCN 214


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 198 CKVCGDKSSGVHYGVITCEGCNGFFRR 278
           C VC    S     ++ C+GCN  F +
Sbjct: 235 CSVCQRLQSPPKNRIVFCDGCNTPFHQ 261


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
 Frame = +3

Query: 156 KSANSIRAQIEIIPCKVCGDKSSG------VHYGVITCEGC 260
           K+A  +  QI    C VC D+ +G         G ++C+ C
Sbjct: 160 KNAKLLEFQIRKFQCNVCFDEFNGTDCFQLTRCGHVSCQSC 200


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 66   SGSVADSTSPPPGNSDGMFGSSISGMFMDKKSANSIRAQIEIIPCKV 206
            + S + S  P PGNS GM   + +       S + + ++I + P  V
Sbjct: 1614 NASFSSSPPPQPGNSSGMSAMNTNTTSTTPVSLSEL-SEITLFPSSV 1659


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 66   SGSVADSTSPPPGNSDGMFGSSISGMFMDKKSANSIRAQIEIIPCKV 206
            + S + S  P PGNS GM   + +       S + + ++I + P  V
Sbjct: 1614 NASFSSSPPPQPGNSSGMSAMNTNTTSTTPVSLSEL-SEITLFPSSV 1659


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 265 PLQPSHVMTP*WTPEDLSPHTLHGI 191
           PL+PSHV  P   PE  +    H I
Sbjct: 148 PLRPSHVSGPLSPPEPKAASVDHSI 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,190,858
Number of Sequences: 5004
Number of extensions: 19291
Number of successful extensions: 54
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)