Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_J21
         (297 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0398 + 8559332-8559718,8561264-8561386,8561537-8561581,856...    28   1.1  
03_02_0558 - 9459745-9459980,9460089-9460157,9460630-9460846           28   1.1  
10_08_0167 - 15370890-15371093,15371588-15371686,15371912-153719...    27   3.5  
08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103     26   6.0  
03_02_0464 - 8683232-8684596                                           26   6.0  
07_03_0910 - 22519006-22519159,22519300-22519355,22519433-225197...    25   8.0  

>09_02_0398 +
           8559332-8559718,8561264-8561386,8561537-8561581,
           8562215-8562290,8562398-8562510,8562774-8562821,
           8563101-8563229
          Length = 306

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 189 IIPCKVCGDKSSGVHYGVI 245
           ++ C++CGD SSG+ +  I
Sbjct: 187 VVDCRICGDHSSGLRFAFI 205


>03_02_0558 - 9459745-9459980,9460089-9460157,9460630-9460846
          Length = 173

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +3

Query: 69  GSVADSTSPPPGNSDGMFGSSISGMFMDKKSANSIRAQIEIIPCKVCGDKSSG 227
           G  A+ ++ PP  +  +F S +S +  D+K  N+     +++  KV  D+ SG
Sbjct: 53  GDGAEVSNVPPLTAPKLFISGLSRLTTDEKLKNAFAPFGQLLEAKVITDRISG 105


>10_08_0167 -
           15370890-15371093,15371588-15371686,15371912-15371996,
           15372570-15372619,15372688-15372764,15373282-15373357,
           15374103-15374354,15374864-15374931,15375172-15375463,
           15376553-15376896,15377517-15377793,15378440-15378506,
           15378848-15378900
          Length = 647

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 271 KKPLQPSHVMTP*WTPEDLSPHTLHGIISI 182
           K  +  S  + P WTP D+ P TL  I S+
Sbjct: 333 KLEILDSAELLPGWTPADIGPSTLEKISSL 362


>08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103
          Length = 196

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +3

Query: 84  STSPPPGNSDGMFGSSISGMFMDKKSANSIRAQIEIIPCKVCGDKSSGVHYGVITCEGCN 263
           ST  PP  S      S   M   K  ++ +R  +++   + CGD  +G     I C G N
Sbjct: 116 STQQPPSCSITPSNPSKDSMIFSKALSSPVRQNLQLYHVQQCGD--TGCFADGIFCPG-N 172

Query: 264 G 266
           G
Sbjct: 173 G 173


>03_02_0464 - 8683232-8684596
          Length = 454

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 153 KKSANSIRAQIEIIPCKVCGD 215
           + S  S  A+ ++ PCKVCG+
Sbjct: 196 QSSFRSFAARGDVFPCKVCGE 216


>07_03_0910 -
           22519006-22519159,22519300-22519355,22519433-22519702,
           22519808-22519986,22520146-22520374,22520985-22521180,
           22521728-22521818,22521921-22521975,22522812-22522902,
           22523366-22523424,22524000-22524050
          Length = 476

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 186 EIIPCKVCGDKSSGVHYGVITCEGCNGFFR 275
           E   CK  G + + V+ G+  C  C+G  R
Sbjct: 30  ECADCKSKGPRWASVNLGIFICMQCSGIHR 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,666,044
Number of Sequences: 37544
Number of extensions: 147756
Number of successful extensions: 440
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)