Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_J18
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    30   0.29 
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    27   2.1  
SPAC5H10.09c |||3-methyl-2-oxobutanoatehydroxymethyltransferase|...    25   6.3  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   6.3  

>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -1

Query: 324 TYTLCFSKPASTCNCFTTCXXXXXXXXXX*SSRREYPSSTIGVRT 190
           T T C S+P  T +  +T            S    YPSST+ + T
Sbjct: 575 TTTTCSSRPEETISTVSTTSTVSESGSSSASITSTYPSSTLSMTT 619


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 484 LLHFVESLLRDYEGVVHGLIEDPLVVMSHMLLLRTCY 374
           LL F+E +  DYE  +H L      + +H+ L    Y
Sbjct: 400 LLKFIEEIRNDYEERIHALESQNSALKAHLRLAVDAY 436


>SPAC5H10.09c
           |||3-methyl-2-
           oxobutanoatehydroxymethyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 135 YLKAVRTPIPSSYKTDDLPYAHRWYWTDIHVETTTSI*EGANI 263
           + K+VR   P+     DLP+     W D      T +  GANI
Sbjct: 70  HTKSVRRGAPNRLLMADLPFMSYSTWEDACKNAATVMRAGANI 112


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 302 LEKHNVYVLNELRDAMGVMQHHDAITGTEKQHVTHDYE 415
           ++K   Y+L+ L   +  ++ HD +  T K+ +T DYE
Sbjct: 552 IQKKEYYLLSVL---LATVRDHDGVLQTWKKLITGDYE 586


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,498
Number of Sequences: 5004
Number of extensions: 47441
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)