Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_J18
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical pr...    63   1e-10
Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical pr...    40   0.002
Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical pr...    40   0.002
U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical pr...    38   0.004
AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical ...    28   4.4  
U80445-5|AAB37796.1|  185|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U29244-14|AAC71095.1|  774|Caenorhabditis elegans Fzo (fzo mitoc...    27   7.6  

>U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical
           protein F55D10.1 protein.
          Length = 955

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
 Frame = +2

Query: 218 YSRRDDYK-YLRRS*YYLQVVKQLQVLAGLEKHNVYVLNELRDAMGVMQHHDAITGTEKQ 394
           ++ R  +K  +R++   LQ+ KQL V+A L   +   +  LR+A  ++QHHDA+TGT K+
Sbjct: 362 FTSRPAFKGMIRQASCMLQLAKQLDVIANLGPEDDSDIEILREASALVQHHDAVTGTAKE 421

Query: 395 HVTHDYERILNQAVDDALIISQQAFNKM 478
           +VT DYE+ L + V +  ++      KM
Sbjct: 422 NVTRDYEKQLAKGVSEVEVVINDFMKKM 449



 Score = 33.1 bits (72), Expect = 0.15
 Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +3

Query: 120 STPTCYLKAVRTPIPS-SYKTDD-LPYA--HRWYWT 215
           STP CY KAV+   P+ S K DD  PYA     YWT
Sbjct: 324 STPACYTKAVQAKTPTLSVKHDDFFPYASGRHSYWT 359


>Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical
           protein F58H1.1b protein.
          Length = 1145

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
 Frame = +2

Query: 218 YSRRDDYKYLRRS*-YYLQVVKQLQVLAGLEKHNVY---VLNEL---RDAMGVMQHHDAI 376
           ++ R  YK L R   +YL+  +    LA +E+  +    +  +L   R A+ + QHHD +
Sbjct: 521 FTSRPFYKQLDRVLQHYLRSAEIAFTLANIEEEGMVEAKIFEKLVTARRALSLFQHHDGV 580

Query: 377 TGTEKQHVTHDYERILNQAVD 439
           TGT K HV  DY + +  A++
Sbjct: 581 TGTAKDHVVLDYGQKMIDALN 601


>Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical
           protein F58H1.1a protein.
          Length = 1143

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
 Frame = +2

Query: 218 YSRRDDYKYLRRS*-YYLQVVKQLQVLAGLEKHNVY---VLNEL---RDAMGVMQHHDAI 376
           ++ R  YK L R   +YL+  +    LA +E+  +    +  +L   R A+ + QHHD +
Sbjct: 519 FTSRPFYKQLDRVLQHYLRSAEIAFTLANIEEEGMVEAKIFEKLVTARRALSLFQHHDGV 578

Query: 377 TGTEKQHVTHDYERILNQAVD 439
           TGT K HV  DY + +  A++
Sbjct: 579 TGTAKDHVVLDYGQKMIDALN 599


>U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical
           protein F48C1.1 protein.
          Length = 1064

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +2

Query: 314 NVYVLNELRDAMGVMQHHDAITGTEKQHVTHDYERILNQAVDDALII 454
           NV  L   R  + + QHHDAITGT K  V  +Y  +L+ ++    I+
Sbjct: 509 NVKRLEAARRNLALFQHHDAITGTSKVSVMDNYSELLHASIVSTNIV 555


>AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical
           protein C26G2.2 protein.
          Length = 952

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 156 PIPSSYKTDDLPYAHRWYWT-DIHVETTT 239
           P+PS   TDD    H W+ T ++ +ETTT
Sbjct: 652 PLPSQLSTDDFVIGH-WFSTEEMKIETTT 679


>U80445-5|AAB37796.1|  185|Caenorhabditis elegans Hypothetical
           protein C50F2.4 protein.
          Length = 185

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 281 VLLPVSNISSFSNTCSRLDVNIRPV 207
           V L   N+ + S+TC R DVN+R +
Sbjct: 115 VTLRFCNLETISSTCKRYDVNLRVI 139


>U29244-14|AAC71095.1|  774|Caenorhabditis elegans Fzo (fzo
           mitochondrial fusion protein)related protein 1 protein.
          Length = 774

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 23/75 (30%), Positives = 35/75 (46%)
 Frame = +2

Query: 284 LQVLAGLEKHNVYVLNELRDAMGVMQHHDAITGTEKQHVTHDYERILNQAVDDALIISQQ 463
           L+V   L K NV++LN   DA       + I   +KQH+T    R     VD+  + S++
Sbjct: 254 LRVAKKLSKPNVFILNNRWDASAA--ETENIEDVKKQHLT----RFRQFLVDELEVCSER 307

Query: 464 AFNKMKQGKSSKQPL 508
             N      SS++ L
Sbjct: 308 EVNDRIFFVSSREVL 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,554,669
Number of Sequences: 27780
Number of extensions: 272148
Number of successful extensions: 682
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)