Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_J18
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.42 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   6.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.1  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 34  TMDPRAAGIRHEDRIFQSESGKTF 105
           T +PRA   RH DR  + ES + +
Sbjct: 165 TFEPRATDSRHYDRYKEEESNENY 188


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 51  CRNSARGSNIPI*KR*DVYND 113
           C   +RG+ +P  +R +V+ND
Sbjct: 16  CTRPSRGNAVPSSQRGNVHND 36


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 51  CRNSARGSNIPI*KR*DVYND 113
           C   +RG+ +P  +R +V+ND
Sbjct: 16  CTRPSRGNAVPSSQRGNVHND 36


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 478 HFVESLLRDYEGVVHGLIEDPLV 410
           H+ +  L D   ++HG  +DPL+
Sbjct: 138 HYDDIWLPDTYFIMHGDFKDPLI 160


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 478 HFVESLLRDYEGVVHGLIEDPLV 410
           H+ +  L D   ++HG  +DPL+
Sbjct: 138 HYDDIWLPDTYFIMHGDFKDPLI 160


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 478 HFVESLLRDYEGVVHGLIEDPLV 410
           H+ +  L D   ++HG  +DPL+
Sbjct: 189 HYDDIWLPDTYFIMHGDFKDPLI 211


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 478 HFVESLLRDYEGVVHGLIEDPLV 410
           H+ +  L D   ++HG  +DPL+
Sbjct: 138 HYDDIWLPDTYFIMHGDFKDPLI 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,868
Number of Sequences: 438
Number of extensions: 3633
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)