Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_J17
(528 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 210 1e-55
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 90 2e-19
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 60 2e-10
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 56 2e-09
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 55 8e-09
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 45 6e-06
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 33 0.026
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 0.43
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 29 0.43
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 29 0.57
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 28 0.75
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.3
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 27 2.3
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 27 2.3
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 3.0
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 5.3
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.3
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 25 5.3
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.0
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 25 7.0
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 25 7.0
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo... 25 7.0
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 25 9.2
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 25 9.2
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 25 9.2
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 25 9.2
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 9.2
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 9.2
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 25 9.2
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 25 9.2
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 210 bits (513), Expect = 1e-55
Identities = 98/135 (72%), Positives = 119/135 (88%)
Frame = +2
Query: 122 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 301
E DLY ++K L+R LE L++QE +IK++ ++LK+E + AQEEVKRIQSVPLVIGQFLEA
Sbjct: 5 EEIDLYNRWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEA 64
Query: 302 VDQNTGIVGSTTGSNYYARILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQ 481
+DQNT IVGSTTGSNY RILST+DRELLKPSASVAL +HSNALVD+LPPEADSSISML+
Sbjct: 65 IDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLR 124
Query: 482 ADEKPDVQYSDIGGM 526
DE+PDV Y+D+GG+
Sbjct: 125 PDERPDVSYADVGGL 139
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 90.2 bits (214), Expect = 2e-19
Identities = 45/128 (35%), Positives = 80/128 (62%), Gaps = 3/128 (2%)
Frame = +2
Query: 152 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSV---PLVIGQFLEAVDQNTGI 322
K+QR+ + L ++EEY+++++R LK + QEE R+ + P+ +G E +D + I
Sbjct: 71 KMQRIHDHLLMEEEYVQNQER-LKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAI 129
Query: 323 VGSTTGSNYYARILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDV 502
V ST G YY I+S +D+++L+P SV LH + ++V +L + D I++++ D+ P
Sbjct: 130 V-STAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTE 188
Query: 503 QYSDIGGM 526
Y+DIGG+
Sbjct: 189 SYADIGGL 196
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 60.1 bits (139), Expect = 2e-10
Identities = 31/135 (22%), Positives = 68/135 (50%)
Frame = +2
Query: 122 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 301
E + KYK + + + ++ R+L K+Y ++++K +QSV +IG+ L+
Sbjct: 3 ERDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQ 62
Query: 302 VDQNTGIVGSTTGSNYYARILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQ 481
+D IV +++G Y + +D+ L V+L + ++ +LP E D + +
Sbjct: 63 LDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMS 122
Query: 482 ADEKPDVQYSDIGGM 526
++ D+ ++ +GG+
Sbjct: 123 IEDPGDISFAGVGGL 137
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 56.4 bits (130), Expect = 2e-09
Identities = 33/154 (21%), Positives = 78/154 (50%), Gaps = 21/154 (13%)
Frame = +2
Query: 128 EDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVD 307
++L ++ + L+ ++ ++ + + + E+ + ++ QE++ + +P ++G +E +D
Sbjct: 37 DELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILD 96
Query: 308 -------------QNT--------GIVGSTTGSNYYARILSTIDRELLKPSASVALHKHS 424
QN+ ++ ++T + ++ ++ E L P + ++K S
Sbjct: 97 MQPDEVDVQESANQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDS 156
Query: 425 NALVDVLPPEADSSISMLQADEKPDVQYSDIGGM 526
++D LP E DS + ++ DEKP +YSDIGG+
Sbjct: 157 YLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGGL 190
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 54.8 bits (126), Expect = 8e-09
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Frame = +2
Query: 203 DEQRN-LKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYARILSTIDR 379
+ QRN L +EE++ +Q +G+ ++ + +N +V Y I ID
Sbjct: 42 EAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDI 101
Query: 380 ELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGM 526
+ +KP+ VAL S L+ +LP + D +S++ ++ PD Y +GG+
Sbjct: 102 KEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGL 150
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 45.2 bits (102), Expect = 6e-06
Identities = 19/76 (25%), Positives = 40/76 (52%)
Frame = +2
Query: 296 EAVDQNTGIVGSTTGSNYYARILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISM 475
++ ++N ++ + + + + ++ V ++ A+ LPP+ D S++M
Sbjct: 108 QSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTM 167
Query: 476 LQADEKPDVQYSDIGG 523
+Q +EKPDV Y D+GG
Sbjct: 168 MQVEEKPDVTYGDVGG 183
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 33.1 bits (72), Expect = 0.026
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 154 TPAHARILGSSGRIYKG*TK-KLKERISPRTRRSKAYSISTTCYWTILRSC*PKHRDCGQ 330
T + R L + RIY K +K + ++SK SI+++CY I+R C H + G+
Sbjct: 216 TASGTRTLQAGERIYLERQKLSIKSQSRNSRKKSKLLSINSSCYSNIVRFCNSDHHEIGK 275
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.1 bits (62), Expect = 0.43
Identities = 24/85 (28%), Positives = 39/85 (45%)
Frame = +2
Query: 5 EAEQ*HKMEEIGIILPEKDEQTTDAKGLPFAGPQSFDELESEDLYTKYKKLQRMLEFLEV 184
E E K E + EK+++ K L A + E+E L + Q+ LE
Sbjct: 577 EEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQ--AAQKALEAKRQ 634
Query: 185 QEEYIKDEQRNLKKEYLHAQEEVKR 259
+E K E++ LK+E Q+E++R
Sbjct: 635 EEARKKREEQRLKREQEKKQQELER 659
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 29.1 bits (62), Expect = 0.43
Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 3/154 (1%)
Frame = +2
Query: 47 LPEKDEQTTDAKGLPFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKK 226
L +K E TDA +S +E S+++ TK + + + +K E+ L +
Sbjct: 317 LQDKLELLTDAYNREKRRARSLEERMSKEMLTKLGESNVDDGMAASRYDTVKREKERLSE 376
Query: 227 EYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYARILSTIDRELLKPSASV 406
QE+ + IQSV + +D+ + I+ + +L+ + +LK
Sbjct: 377 HLKSLQEQYEHIQSVYKNV-----LLDRESYIMRLGNKISENNELLN--ENRVLKEKLQT 429
Query: 407 ALHKHSNALVDVLPPEADSS---ISMLQADEKPD 499
L K + + + A++S +SM +ADE+ D
Sbjct: 430 YLDKKESNVTSKIKSTAENSSKPLSMNEADERKD 463
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 28.7 bits (61), Expect = 0.57
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 104 QSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKD--EQRNLKKEYLHAQEEVKRI 262
QSF E E E TK+K L R LE E +K E +E L ++E RI
Sbjct: 36 QSFREKELEGSQTKFKVLSRKLEISTQAMESLKQTAESSQHAEEILSREKEKFRI 90
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 28.3 bits (60), Expect = 0.75
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 261 FNQYHLLLDNS*KLLTKTQGLWAALQDLITMH 356
FN Y L++ NS LL+ +Q LW A+ L T+H
Sbjct: 1637 FNSYVLVM-NSDDLLSYSQILWTAIACLTTIH 1667
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 389 KPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQY 508
KPS++V+ S+A DV+ + S+I+ D K DV +
Sbjct: 244 KPSSNVSRGTPSSAHSDVIEISSSSAIARTSGDRKDDVLF 283
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 26.6 bits (56), Expect = 2.3
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = +2
Query: 305 DQNTGIVGSTTGSNYYARILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQA 484
D+NT + SN + + I ELL PS A+ +SN D+ P SS + A
Sbjct: 14 DENTDALFKLHTSNRKSANMFGIKSELLNPSELSAVGSYSN---DICPNRQSSSST--AA 68
Query: 485 DEKPDVQYSD 514
D P S+
Sbjct: 69 DTSPSTNASN 78
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Frame = -2
Query: 146 ILYISLLIPIHRMIVVQQKEAPWHRWSARPFQAK*YQFL-----PFYVTVQP 6
+LY+ I + + W +W P Q K YQF+ PF+ + P
Sbjct: 472 VLYVWFDATIGYISITANYTDEWEKWWRNPEQVKLYQFMGKDNVPFHTVIFP 523
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 221 KKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGI 322
K ++ A E+ + VPL +F + VDQN G+
Sbjct: 51 KSKHSEAVVEILKSAKVPLKNKEFSDLVDQNIGV 84
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 5.3
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = +2
Query: 122 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 301
ES+ TK+ E +EV ++Y++ E+ EYL QE + V V+ F A
Sbjct: 378 ESQSKTTKHSTSLPSTEPVEVDKQYMESEKIPTIDEYL--QEYSNEDEIVLQVLESFPAA 435
Query: 302 VDQNTGIVGSTTGSNYYARIL--STIDREL 385
V +T + +T + Y R + S I R L
Sbjct: 436 VSFST--ITNTIQAKYSNRKIKNSNITRSL 463
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 5.3
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 251 VKRIQSVPLVIGQFLEAVDQN 313
+K+ +SVP + GQF+E V+ N
Sbjct: 193 LKKSKSVPRLRGQFMEPVEHN 213
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 5.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 128 EDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 268
E+ + QR +E QEE IK+E+ ++E +EEV +S
Sbjct: 333 EEAVKSLPETQRTTSRIETQEEEIKEEEMEGEEE--EEEEEVPNYES 377
>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 350 YARILSTIDRELLKPSASVALHKHSNALVDVLP 448
Y ++ T D EL PSAS+ + N +++LP
Sbjct: 84 YENLIPTNDDELHSPSASIHSFQTYNLPLEMLP 116
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 182 VQEEYIKDEQRNLKKEYLHAQEEVK 256
+QE+ KDEQR LKK L +E +K
Sbjct: 41 LQEKQQKDEQRELKKRKLE-EERLK 64
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 146 YKKLQRMLEFLEVQEEYIKDEQRNLKKEYLH 238
Y+++QR+LE LE++E D L+ Y+H
Sbjct: 95 YQQIQRLLEKLEIKEGNYGDGYA-LQPSYIH 124
>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 349 VIRSCSAAHNPCVLVNSF*ELSNNKW 272
VI++ A +N CV+ S EL NNK+
Sbjct: 160 VIKNKPAFYNQCVMEVSILELLNNKY 185
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +2
Query: 122 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRI 262
E D+ + +K + L+ + E ++D RN+ E + +++E+K +
Sbjct: 124 EHLDIKKRLEKSDETVCKLKEENENLQDMLRNVGNELVESRDEIKEL 170
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 437 DVLPPEADSSISMLQADEKPDVQYSD 514
D L + D + +Q+D KPDV+ SD
Sbjct: 255 DQLTVKEDFDLKDMQSDIKPDVEKSD 280
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 24.6 bits (51), Expect = 9.2
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +2
Query: 125 SEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKE 229
+EDL + + + +++LE + E + + NL++E
Sbjct: 575 NEDLLIELQGKEEKIQYLETENEEVLQKYENLQEE 609
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 229 ISPRTRRSKAYSISTTCYWTIL 294
ISP RRS S+STT Y ++
Sbjct: 541 ISPIARRSPKVSVSTTLYTRLI 562
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 24.6 bits (51), Expect = 9.2
Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 2/145 (1%)
Frame = +2
Query: 83 GLPFAGPQSFD-ELESEDLYTKY-KKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVK 256
G G S D ++ + T Y ++L + L++ EY+ D N + + + +
Sbjct: 190 GKKLLGSASRDYDVNPANYSTHYLQQLSNLKSRLDLAGEYLDDSIMNDLGDNVGSNSKGS 249
Query: 257 RIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYARILSTIDRELLKPSASVALHKHSNALV 436
S+P + +++ N T N + LS R LK A + ++
Sbjct: 250 PTTSIP----EHKTSINNNKPEDTPTPSENVH---LSARQRNALKRKARQMKNSQKVRVI 302
Query: 437 DVLPPEADSSISMLQADEKPDVQYS 511
DV P S AD+K Y+
Sbjct: 303 DVAPTLVHQQNSTSSADKKTGADYN 327
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 9.2
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 287 QFLEAVDQNTGIVGSTTGSNYYARILSTIDRELLKPSASVALHKHSN 427
QFL N+G ++ G + R+LS + ++ PS+S L K +N
Sbjct: 465 QFLARNSDNSGQSYNSEGDSNSKRLLSMLSQQDTTPSSS-TLSKEAN 510
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 24.6 bits (51), Expect = 9.2
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +3
Query: 225 KNISTHKKK*SVFNQYHLLLDNS*KLLTKTQGLWAALQDLITMHAFYPQLIE 380
KNIS + + N L S KL K + L DLIT H P+L E
Sbjct: 35 KNISELQALQKIQNHTEKLKFFSSKLHNKGEPFTLQLGDLITEHTSVPELNE 86
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 152 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEE 250
KL+ ++ F++ EE+ KDE+ K++ +EE
Sbjct: 422 KLEDIIIFVDPFEEWKKDEREKEKRKRQEEEEE 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,744
Number of Sequences: 5004
Number of extensions: 49602
Number of successful extensions: 196
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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