Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_J15
         (530 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.37 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.5  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   7.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   7.9  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   7.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 223 PTSSKSSEASLPATLTSTSCPPGCSSMNLATSYTT 119
           P    +S  SLPAT+T+T+     ++   A + TT
Sbjct: 93  PLHPPASSTSLPATITTTTTTTTTTTATAAATATT 127


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 135 PRRTRHYLL*TTSQIWSCARRSPS 64
           P R   Y     +Q++SC  RSP+
Sbjct: 64  PFRAEDYRQEVHAQVYSCLARSPA 87


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 327 SRPISSVSYWSRPCPHRRAHQLRIFS*APW 238
           +R ISS+    +P P   + + R FS   W
Sbjct: 483 TRDISSLVVQEQPTPTTESEERRFFSFHQW 512


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 513 NNNYDTRSLNNVIDTKQQSSP 451
           NNNY+ +   N+I+ +Q   P
Sbjct: 105 NNNYNKKLYYNIINIEQIPVP 125


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 513 NNNYDTRSLNNVIDTKQQSSP 451
           NNNY+ +   N+I+ +Q   P
Sbjct: 105 NNNYNKKLYYNIINIEQIPVP 125


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 513 NNNYDTRSLNNVIDTKQQSSP 451
           NNNY+ +   N+I+ +Q   P
Sbjct: 325 NNNYNKKLYYNIINIEQIPVP 345


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 84  NSKSETLFIIDNVVYDVAKFMDEHPGGHEVLVNVA 188
           N+K   L  + N +Y+V   +D + G  E+  N+A
Sbjct: 385 NNKISALRAL-NDLYNVKNTLDSYNGSMEINQNIA 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,842
Number of Sequences: 438
Number of extensions: 2780
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)