Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_J14
(571 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 38 0.004
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 38 0.006
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050 31 0.49
01_01_0120 + 1119319-1119447,1120565-1120632,1121682-1121928,112... 30 1.5
10_02_0148 - 5859664-5859828,5859916-5860043,5860310-5860451,586... 29 3.4
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799... 29 3.4
10_02_0150 - 5883942-5884328,5884573-5884677,5885219-5885311,588... 28 4.6
08_01_1029 - 10419090-10419476,10419721-10419822,10420367-104204... 28 4.6
06_03_1065 - 27316270-27317032,27317062-27317189 28 4.6
11_06_0091 + 19967390-19969825 27 8.0
03_02_0387 - 8016399-8016575,8016661-8016788,8017073-8017214,801... 27 8.0
02_05_0883 - 32481502-32483085 27 8.0
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +3
Query: 399 NLYLKRSYEYLLSASYFNNYKINRAGFSKMFRKLSDEAWEKAIDLIKHVTMRG 557
N+ SY Y +YF+ + GF+K F++ SDE + A L+K+ MRG
Sbjct: 100 NVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNMRG 152
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +3
Query: 417 SYEYLLSASYFNNYKINRAGFSKMFRKLSDEAWEKAIDLIKHVTMRG 557
SY Y +YF+ + GF+K F++ SDE + A LIK+ MRG
Sbjct: 138 SYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRG 184
>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
Length = 478
Score = 31.5 bits (68), Expect = 0.49
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 384 LQAYANLYLKRSYEYLLSASYFNNYKINRAGFSKMFRKLSDEA-WEKAIDLIKHVTMRGI 560
L AYA ++L +++ AG+S + R D W+KA DLI + G+
Sbjct: 163 LNAYARAGRLEDSWWVLGEMKRRGIRLDTAGYSTLVRLYRDNGMWKKATDLIMEMQELGV 222
Query: 561 NMD 569
+D
Sbjct: 223 ELD 225
>01_01_0120 +
1119319-1119447,1120565-1120632,1121682-1121928,
1122430-1122498,1122782-1122907,1123326-1123406,
1123484-1123561,1124084-1124319,1124399-1124545,
1124864-1125152,1125231-1125352,1125713-1125749
Length = 542
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 57 VPIQYGRFLSRSSRYSLCWKSPSAPVCVKAALSTVRVINLIPSIHNRLGTMKKITFAVAC 236
VP L S SL K+ V ++ +S +V LI S +LG + T+AV C
Sbjct: 255 VPAPSSYLLKSSGLKSLFVKASGVSVSIQVDVSNTKVDYLINSACEKLGVKAQDTYAVLC 314
>10_02_0148 -
5859664-5859828,5859916-5860043,5860310-5860451,
5860548-5860643,5860836-5860976,5861799-5861973,
5862416-5862702,5862777-5862870,5863244-5863335,
5863459-5863553,5863648-5863759
Length = 508
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Frame = -1
Query: 184 DGIKFITRTVESAAFTHTGAEG----DFQHKEY--LLDRDKNLPYCIGTIQTDKY-VNKC 26
+G + T T+ESAA HT +G +F Y L+ +K + C+G++ +KY V C
Sbjct: 89 EGARIDTPTLESAAGPHTTVDGKEVVNFASANYLGLIGNEKIIDSCVGSV--EKYGVGSC 146
>02_02_0220 -
7992124-7992351,7992458-7992562,7993499-7993711,
7993937-7994196,7994425-7994701,7995226-7995371,
7995519-7995903,7996680-7996964
Length = 632
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +3
Query: 414 RSYEYLLSASYFNNYKINRAGFSKMFRKLSDEAWEKAIDL 533
R Y L YF+ N+ + + ++DE W K +D+
Sbjct: 476 RHMRYRLKKKYFDGVPANQVRTTSPLKCMTDEQWTKLVDM 515
>10_02_0150 -
5883942-5884328,5884573-5884677,5885219-5885311,
5885394-5885606,5886976-5887005
Length = 275
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +3
Query: 411 KRSYEYLLSASYFNNYKINRAGFSKMFRKLSDEAWEKAIDL 533
+R Y L YFN N + ++D W++ +D+
Sbjct: 34 QRQMRYRLKKKYFNGIPANEVRTTSPLSSMTDNEWKQLVDM 74
>08_01_1029 -
10419090-10419476,10419721-10419822,10420367-10420459,
10420542-10420754,10421625-10421654
Length = 274
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +3
Query: 411 KRSYEYLLSASYFNNYKINRAGFSKMFRKLSDEAWEKAIDL 533
+R Y L YFN N + ++D W++ +D+
Sbjct: 34 QRQMRYRLKKKYFNGIPANEVRTTSPLSSMTDNEWKQLVDM 74
>06_03_1065 - 27316270-27317032,27317062-27317189
Length = 296
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 341 AIRRIQ*LQPRRWRTSGLRQPLPQAVIRISAICFIFQQLQN 463
A RR + + RRWR G+ Q LP A + + CF ++ Q+
Sbjct: 66 AARRRRRRRQRRWRHQGVAQLLPGAPVDHALPCFRGEERQS 106
>11_06_0091 + 19967390-19969825
Length = 811
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/78 (21%), Positives = 31/78 (39%)
Frame = +3
Query: 33 FTYLSVCIVPIQYGRFLSRSSRYSLCWKSPSAPVCVKAALSTVRVINLIPSIHNRLGTMK 212
+ L + + P F + +S CW P P +++ + V +I I +
Sbjct: 326 YNSLKIVVDPEWLPPFRVEKAYFSSCWMGPKFPAWLQSQVYIVELIMNDAGIDDTFPDWF 385
Query: 213 KITFAVACLLALSSVYAG 266
TF+ A L +S+ G
Sbjct: 386 STTFSKATFLEISNNQIG 403
>03_02_0387 -
8016399-8016575,8016661-8016788,8017073-8017214,
8017301-8017396,8017572-8017712,8017857-8018031,
8018443-8018575,8018661-8018733,8018807-8018900,
8019890-8019981,8020091-8020185,8020267-8020378
Length = 485
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Frame = -1
Query: 184 DGIKFITRTVESAAFTHTGAEG----DFQHKEY--LLDRDKNLPYCIGTIQTDKY-VNKC 26
DG + T +ESAA HT +G +F Y L+ +K + C+G++ +KY V C
Sbjct: 89 DGARIDTPMLESAAAPHTTIDGKEVINFASANYLGLIGNEKIIDSCVGSL--EKYGVGSC 146
>02_05_0883 - 32481502-32483085
Length = 527
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 102 SLCWKSPSAPVCVKAALST-VRVINLIPSIHNRLGT 206
S C SPS+P+ + ALS RV+ L PS H L T
Sbjct: 109 SACADSPSSPLARRLALSVHARVLKLFPS-HLLLST 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,079,658
Number of Sequences: 37544
Number of extensions: 265299
Number of successful extensions: 720
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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