Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_J14
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    40   0.002
U53149-1|AAD31546.1|  328|Caenorhabditis elegans Prion-like-(q/n...    34   0.063
AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin pro...    34   0.083
U21308-9|AAW57822.1|  787|Caenorhabditis elegans Nfi (nuclear fa...    27   7.2  
U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear fa...    27   7.2  
U21308-7|AAW57823.1|  823|Caenorhabditis elegans Nfi (nuclear fa...    27   7.2  
AL034364-1|CAA22251.1|  272|Caenorhabditis elegans Hypothetical ...    27   7.2  
U64842-3|AAB37082.1|  218|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +3

Query: 357 NDYSHVAGELQAYANLYLKRSYEYLLSASYFNNYKINRAGFSKMFRKLSDEAWEKAIDLI 536
           N +S V   +    N+ L  SY YL  + YF+   +     +K F++ SDE  E A +L+
Sbjct: 7   NYHSEVEAAVNKQINIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATELM 66

Query: 537 KHVTMRG 557
           +   +RG
Sbjct: 67  RVQNLRG 73


>U53149-1|AAD31546.1|  328|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 16
           protein.
          Length = 328

 Score = 34.3 bits (75), Expect = 0.063
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = -3

Query: 326 QRQSCRC---RHTFSCHSFVT--TVTCVNARQSQETSYCECDFLHCSKAI 192
           +RQ+C+C   + + SC+S +   T TC N +QS   S C C     SK++
Sbjct: 25  KRQNCKCSPPQSSCSCNSAIQSQTCTCHNTQQSTSASNCNCVLKSNSKSV 74


>AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin
           protein 1 protein.
          Length = 170

 Score = 33.9 bits (74), Expect = 0.083
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = +3

Query: 357 NDYSHVAGELQAYANLYLKRSYEYLLSASYFNNYKINRAGFSKMFRKLSDEAWEKAIDLI 536
           N +  V   +    N+ L  SY YL  +++F+   I     +K F++ SDE    A +L+
Sbjct: 7   NYHDEVEAAVNKQINVELYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHATELM 66

Query: 537 KHVTMRG 557
           +   +RG
Sbjct: 67  RIQAVRG 73


>U21308-9|AAW57822.1|  787|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform b protein.
          Length = 787

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 390 AYANLYLKRSYEYLLSASYFNNYKINRAGFSKMFRKLSDE 509
           A +NL  + S  Y+ S + F   + +   FSK+F+K+ ++
Sbjct: 526 AVSNLISRESSGYMASPTKFTTARGDTTSFSKIFQKIEEK 565


>U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform a protein.
          Length = 807

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 390 AYANLYLKRSYEYLLSASYFNNYKINRAGFSKMFRKLSDE 509
           A +NL  + S  Y+ S + F   + +   FSK+F+K+ ++
Sbjct: 546 AVSNLISRESSGYMASPTKFTTARGDTTSFSKIFQKIEEK 585


>U21308-7|AAW57823.1|  823|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform c protein.
          Length = 823

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 390 AYANLYLKRSYEYLLSASYFNNYKINRAGFSKMFRKLSDE 509
           A +NL  + S  Y+ S + F   + +   FSK+F+K+ ++
Sbjct: 562 AVSNLISRESSGYMASPTKFTTARGDTTSFSKIFQKIEEK 601


>AL034364-1|CAA22251.1|  272|Caenorhabditis elegans Hypothetical
           protein W06D4.3 protein.
          Length = 272

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 438 QIADIRMTA*GRGWRRPEVRQRRGCSHCIRRIARYTCPETKLSL*THI 295
           +I D    A G+  ++    Q+R  SHCI+++  YT  E+ + L  H+
Sbjct: 120 KILDAYSIACGKIGQKERQLQKRTRSHCIKKMRMYTADES-VELNNHV 166


>U64842-3|AAB37082.1|  218|Caenorhabditis elegans Hypothetical
           protein F25B4.4 protein.
          Length = 218

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 27  HLFTYLSVCIVPIQYGRFLSRSSRYSLCWKSPSAPVCVKA-ALSTVRVIN 173
           H+F  +S    P+ +G     S++  L  KSPSAP   K   LS  R IN
Sbjct: 165 HVFVQMS----PVSHGFGKDASAKAVLTIKSPSAPTSTKGILLSGERTIN 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,319,608
Number of Sequences: 27780
Number of extensions: 240350
Number of successful extensions: 680
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)