Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_J13
(491 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0497 - 18336819-18337140,18337226-18337360,18337579-183376... 31 0.66
10_08_0098 + 14779883-14780037,14780104-14781034 29 1.5
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485... 29 2.0
09_04_0290 - 16429495-16429559,16430040-16430316,16430410-164305... 29 2.7
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 29 2.7
01_06_1366 - 36695031-36695129,36697608-36697706,36697801-366978... 29 2.7
12_01_1069 - 11060045-11060262,11060404-11060545,11060624-110607... 28 3.5
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 28 3.5
09_01_0099 + 1493177-1493453,1494961-1495175,1495490-1496074 28 4.7
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297... 28 4.7
01_06_0480 + 29639124-29639412,29639476-29639552,29639639-296397... 28 4.7
01_04_0103 + 16046012-16046018,16046214-16046366,16046908-160471... 28 4.7
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 27 6.2
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200... 27 6.2
>10_08_0497 -
18336819-18337140,18337226-18337360,18337579-18337673,
18337759-18337845,18337923-18338129,18338209-18338535,
18338711-18338803,18338861-18339175,18339283-18339792,
18339889-18339960,18341209-18341256,18341427-18341551,
18341640-18341661
Length = 785
Score = 30.7 bits (66), Expect = 0.66
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -3
Query: 468 NIPIDVKSDDSCIDSDASW---SQSRPKKRIHLQKMCKSCNKRKRNNSSLHENK 316
++P++ SDD +D D+ W + + KKR Q K + KR H K
Sbjct: 728 SMPVEDDSDDDFVDPDSQWKKQKKEKSKKRNKRQPSKKGSSTTKRKEKIPHPKK 781
>10_08_0098 + 14779883-14780037,14780104-14781034
Length = 361
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 195 VHNHSTIKSSTPIGRALYVE-TDYA 124
+ NHS IKS TP+GR E DYA
Sbjct: 38 IRNHSRIKSMTPLGRGETAEAADYA 62
>04_03_0658 +
18447986-18448117,18448204-18448317,18448388-18448507,
18448589-18449215,18449289-18449462,18449545-18449809,
18449889-18449959,18450043-18450145,18450221-18450280,
18450533-18450744,18450830-18450901,18451446-18451502,
18451598-18451882,18452359-18452371,18452396-18452463,
18452649-18452747,18452836-18452967,18453038-18453141,
18453234-18453423,18453519-18453524
Length = 967
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Frame = -3
Query: 426 SDASWSQSRPKKRIHLQKMCKSCNKRKRNNSSLHE--NKCTDCECMDSEI--ITNDINIS 259
+DAS S + + K+ KSCN +NN ++ + + + MD++I N N
Sbjct: 459 ADASKSNADTNLSSEVDKLSKSCNPTDQNNDEKNDVTSAHSPKDNMDNDIDDNRNANNKE 518
Query: 258 QPTNIYDNKVTTSLTNNSVQYV 193
+ N++ K+ LT ++V
Sbjct: 519 EIDNVHVAKIMKKLTKEGQEFV 540
>09_04_0290 -
16429495-16429559,16430040-16430316,16430410-16430571,
16431308-16431926,16431976-16432172
Length = 439
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 438 NHLILHQSVYSCDYL*Y 488
NHL +H SV+SCD L Y
Sbjct: 124 NHLAVHSSVFSCDRLAY 140
>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 28.7 bits (61), Expect = 2.7
Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 14/122 (11%)
Frame = -3
Query: 477 NHTNIPIDVKSDDS--CIDSDASWSQSR-PKKRIHLQK-MCKSCNKRKRNNSSLHENKCT 310
NH P S + C D S + P ++ K C + + S+LH+ K
Sbjct: 767 NHHEEPAHKHSSNQHGCHDHSHGHSNCKEPSNQLITNKHACHDGHNHCADTSNLHDTKKH 826
Query: 309 DCECMDSEIITNDINISQPTNIY----------DNKVTTSLTNNSVQYVHNHSTIKSSTP 160
DC + ++N PTN + + V T + H H I P
Sbjct: 827 DCHGHEHSTCKEELNALPPTNDHACHGHEHSHCEEPVALHSTGEHACHEHEHEHIHCDEP 886
Query: 159 IG 154
IG
Sbjct: 887 IG 888
>01_06_1366 -
36695031-36695129,36697608-36697706,36697801-36697873,
36697958-36698068,36698163-36698335
Length = 184
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -3
Query: 402 RPKKRIHLQKMCK-SCNKRKRNNSSLHENKCTDCECMDSEII-TNDINISQPTNIYDNKV 229
R K R L++ K C K+K+ + C C C+ +II T +++ + T I+D ++
Sbjct: 105 RGKWRERLRRKFKFPCAKQKKGTNLCGYYVCEYCHCLADQIITTRELDARRITEIFDAEL 164
Query: 228 T 226
+
Sbjct: 165 S 165
>12_01_1069 -
11060045-11060262,11060404-11060545,11060624-11060776,
11060942-11061013,11062774-11063082,11063323-11063378,
11066436-11066533,11066616-11066700,11066800-11067001,
11067471-11067542,11069555-11069624,11071829-11072038,
11072337-11072609,11073912-11074183,11075354-11075557
Length = 811
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -3
Query: 489 NIKDNHTNIPIDVKSDDSCIDSD-ASWSQSRPKKRIHLQKMCKSCNKRKRNNSSLHENKC 313
+I+DN T + + K DD SD S+S +K++ Q K+ + K +
Sbjct: 318 SIRDNQTKLNSETKEDDCNTQSDIKKVSRSARRKKLKRQLRQKAKEQLKEKEHCQEQPTV 377
Query: 312 TDC 304
DC
Sbjct: 378 ADC 380
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 423 DASWSQSRPKKRIHLQKMCKSCNKRKRNNSSLHENK 316
+ W Q +KR HL++ K N K+N H+N+
Sbjct: 509 EEEWEQL-DEKRTHLEEEAKKLNNEKKNLERWHDNE 543
>09_01_0099 + 1493177-1493453,1494961-1495175,1495490-1496074
Length = 358
Score = 27.9 bits (59), Expect = 4.7
Identities = 25/135 (18%), Positives = 56/135 (41%)
Frame = -3
Query: 465 IPIDVKSDDSCIDSDASWSQSRPKKRIHLQKMCKSCNKRKRNNSSLHENKCTDCECMDSE 286
I + +K ++ C +D +S+ + +++ +K S + S L E + ++
Sbjct: 187 INLKIKENEEC--NDKEFSKGLLEMKVYTRK---SMIVSETLESRLSEVELVSASVKEAL 241
Query: 285 IITNDINISQPTNIYDNKVTTSLTNNSVQYVHNHSTIKSSTPIGRALYVETDYAPYIVHV 106
T +INI ++ K+T T+ + S + +T +G ++ +V V
Sbjct: 242 EGTVEINILSGPEVFHGKITACTTDVPNDIILYDSDVDDATTVGDDRVMQLLRRVVVVSV 301
Query: 105 QRIESTSNDGTTLHP 61
+ + D +HP
Sbjct: 302 NEMLILNIDAHNIHP 316
>06_03_0551 -
22027441-22028224,22029015-22029344,22029510-22029778,
22030530-22031453,22037761-22038360,22040049-22040267
Length = 1041
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = -1
Query: 383 TYKRCARVVIKEKEIIVHCMKINALIVNVWTLKLLPMISIF 261
T K C V+ ++ + VHC N L+ ++ L+ +F
Sbjct: 231 TSKSCIVVITTQESVAVHCAGANGLVCSITCLQATAASDLF 271
>01_06_0480 +
29639124-29639412,29639476-29639552,29639639-29639749,
29639944-29640012,29640650-29640706,29640814-29640852,
29640957-29641061,29641158-29641240,29641333-29641414,
29641760-29641903,29641987-29642067,29642166-29642294
Length = 421
Score = 27.9 bits (59), Expect = 4.7
Identities = 22/102 (21%), Positives = 42/102 (41%)
Frame = -3
Query: 471 TNIPIDVKSDDSCIDSDASWSQSRPKKRIHLQKMCKSCNKRKRNNSSLHENKCTDCECMD 292
+ I ++++S + C SD S ++++ Q NKRKR + +H N+
Sbjct: 303 SKIDLELESGE-CFMSDKKKSAKEWQEKLEKQSQKAEENKRKREAAFVHPNEDIATPYES 361
Query: 291 SEIITNDINISQPTNIYDNKVTTSLTNNSVQYVHNHSTIKSS 166
++ I N+ I+ K N + V S + S+
Sbjct: 362 AKSIINNGEIADMAKSLKKKAKELRKNEEQENVRLESYVASN 403
>01_04_0103 +
16046012-16046018,16046214-16046366,16046908-16047158,
16047509-16047631,16047818-16047931,16048153-16048315,
16048867-16049462
Length = 468
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = -3
Query: 333 SLHENKCTDCECMDSEIITNDINISQPTNIYDNKVTTSLTNNS----VQYVHNHSTIKSS 166
++ N +++++ TN I++ P NI ++ S TN+ VH H K+S
Sbjct: 167 NVFSNSAAYTSTINADVPTNTIDLLLPNNIRLVRLRFSSTNDGNGSVASEVHCHHDAKTS 226
Query: 165 -TPIGRALY 142
TPI +Y
Sbjct: 227 ETPISLCIY 235
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 27.5 bits (58), Expect = 6.2
Identities = 21/93 (22%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = -3
Query: 297 MDSEIITNDINISQPTNI-YDNKVTTSLTNNSVQYVHNHSTIKSSTPIGRALYVETDYAP 121
+D E +N+S ++ ++N+ S+ ++ +QY ST+ SS+P ++ ++ +D
Sbjct: 918 LDGECTDLLVNLSGIQSVVFENQPQMSICDDILQY----STVLSSSPYDKSQFILSDCVF 973
Query: 120 YIVHVQRIESTSNDGTTLHPVTFGKFLKSNGIH 22
++ +S ND + ++ G S+GI+
Sbjct: 974 HLCAGPNKDSLMNDKMQVESIS-GCSTDSSGIY 1005
>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
22220149-22220365,22220798-22221021,22221559-22221738,
22221875-22222013,22222107-22222255,22223394-22223505,
22223998-22224506,22224661-22224784,22224904-22225178,
22225507-22225626,22225707-22225769,22225861-22226052,
22226381-22226440,22226535-22226738,22226926-22227051,
22227093-22227254,22227357-22227476,22227665-22227820,
22227895-22227957,22228041-22228168,22228524-22228920,
22229442-22229544,22229646-22229776,22230096-22230167,
22230472-22230553,22231083-22231190,22231288-22231429,
22231659-22231698,22231746-22231876,22232215-22232301,
22232395-22232605,22232687-22232741,22232836-22232927,
22233011-22233071,22233361-22233719
Length = 2010
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 477 NHTNIPIDVKSDDSCIDSDASWSQSRPKK 391
NH N+P D K + S + WS KK
Sbjct: 1736 NHINVPFDCKVEPSFVGFVEPWSDDAAKK 1764
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,097,632
Number of Sequences: 37544
Number of extensions: 201501
Number of successful extensions: 579
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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