Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_J13
         (491 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF005043-1|AAB61614.1|  976|Homo sapiens poly(ADP-ribose) glycoh...    30   5.0  
BC121038-1|AAI21039.1|  501|Homo sapiens PRDM5 protein protein.        29   8.8  
BC121037-1|AAI21038.1|  599|Homo sapiens PRDM5 protein protein.        29   8.8  
AF272897-1|AAF78077.1|  630|Homo sapiens PR-domain zinc finger p...    29   8.8  

>AF005043-1|AAB61614.1|  976|Homo sapiens poly(ADP-ribose)
           glycohydrolase protein.
          Length = 976

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 9/111 (8%)
 Frame = -3

Query: 483 KDNHTNIPIDVKSDDSCIDSDASWSQSRPKKRIHLQKMCKSCNKRK----RNNSSLH--E 322
           KD H    +   S  +C+   A   +      +  QK   S    K      + SL   E
Sbjct: 42  KDAHVQFRVP-PSSPACVPGQAGQHRGSATSLVFKQKTITSWMDTKGIKTAESESLDSKE 100

Query: 321 NKCTDCECMDSEIITNDI---NISQPTNIYDNKVTTSLTNNSVQYVHNHST 178
           N  T  E M S +  ++    N+ +  N+    +  SLT  S QY++ H T
Sbjct: 101 NNNTRIESMMSSVQKDNFYQHNVEKLVNVSQLSLDKSLTEKSTQYLNQHQT 151


>BC121038-1|AAI21039.1|  501|Homo sapiens PRDM5 protein protein.
          Length = 501

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
 Frame = -3

Query: 453 VKSDDSCIDSDASWSQSRPKKRIHLQKMCKSCNKRKRNNSSLHENK----CTDC-ECMDS 289
           +KS D+      +     PKK++    +C  CNK+  + SSL E++      DC ECM  
Sbjct: 242 LKSKDALKRHQENVHTGDPKKKL----ICSVCNKKCSSASSLQEHRKIHEIFDCQECMKK 297

Query: 288 EIITNDINISQPTNIYDNKVTTSLTNNS 205
            I  N +     T+         + N S
Sbjct: 298 FISANQLKRHMITHSEKRPYNCEICNKS 325


>BC121037-1|AAI21038.1|  599|Homo sapiens PRDM5 protein protein.
          Length = 599

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
 Frame = -3

Query: 453 VKSDDSCIDSDASWSQSRPKKRIHLQKMCKSCNKRKRNNSSLHENK----CTDC-ECMDS 289
           +KS D+      +     PKK++    +C  CNK+  + SSL E++      DC ECM  
Sbjct: 242 LKSKDALKRHQENVHTGDPKKKL----ICSVCNKKCSSASSLQEHRKIHEIFDCQECMKK 297

Query: 288 EIITNDINISQPTNIYDNKVTTSLTNNS 205
            I  N +     T+         + N S
Sbjct: 298 FISANQLKRHMITHSEKRPYNCEICNKS 325


>AF272897-1|AAF78077.1|  630|Homo sapiens PR-domain zinc finger
           protein 5 protein.
          Length = 630

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
 Frame = -3

Query: 453 VKSDDSCIDSDASWSQSRPKKRIHLQKMCKSCNKRKRNNSSLHENK----CTDC-ECMDS 289
           +KS D+      +     PKK++    +C  CNK+  + SSL E++      DC ECM  
Sbjct: 273 LKSKDALKRHQENVHTGDPKKKL----ICSVCNKKCSSASSLQEHRKIHEIFDCQECMKK 328

Query: 288 EIITNDINISQPTNIYDNKVTTSLTNNS 205
            I  N +     T+         + N S
Sbjct: 329 FISANQLKRHMITHSEKRPYNCEICNKS 356


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,988,711
Number of Sequences: 237096
Number of extensions: 1222017
Number of successful extensions: 6780
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6776
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4423060356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)