Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_J13
         (491 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   1.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.3  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   9.4  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   9.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.4  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 477 NHTNIPIDVKSDDSCIDSDAS 415
           N  NI IDVK    CI+++ S
Sbjct: 104 NRKNISIDVKMLSECINANKS 124


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 360  NSCTSFVSVCVSLVLTETMMHLNLYK-NHLILHQSVYSCDY 479
            +SC S    C SLV   T ++  +YK N  I+ +S  S  Y
Sbjct: 919  SSCVSNDGGCSSLVDVSTPVNKKVYKQNDYIVDESSSSSFY 959



 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 183 STIKSSTPIGRALYVETDY 127
           S +  STP+ + +Y + DY
Sbjct: 930 SLVDVSTPVNKKVYKQNDY 948


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 436 LYRFRCIMVSVKTKETHTL 380
           +Y++RC   +  TK  H+L
Sbjct: 42  VYQYRCANCTYATKYCHSL 60


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +2

Query: 146 NALPIGVELF 175
           NALP+G+E++
Sbjct: 66  NALPVGIEIW 75


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -3

Query: 414 WSQSRPKKRIHLQKMCKS 361
           W+++RP KR +++ + K+
Sbjct: 327 WNENRPLKRRNIEIVAKN 344


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 5/16 (31%), Positives = 14/16 (87%)
 Frame = +3

Query: 378 VSVCVSLVLTETMMHL 425
           +++C++++L++TM  L
Sbjct: 267 IALCINILLSQTMFFL 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,150
Number of Sequences: 438
Number of extensions: 2369
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)