Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_J12
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   177   1e-45
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   177   1e-45
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    28   1.2  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   4.7  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   8.3  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  177 bits (430), Expect = 1e-45
 Identities = 77/125 (61%), Positives = 106/125 (84%)
 Frame = +2

Query: 218 SPKKVGDDIAKATSDWKGLKITVQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKN 397
           SPKKVG+DIAKAT DWKGL++TV+L +QNRQA +SVVPSA+AL+I+ALKEP RDRKK KN
Sbjct: 38  SPKKVGEDIAKATKDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKN 97

Query: 398 IKHHGNITMEDVLGIAKIMRSRSMARYLSSSVKEILGTAQSVGCTVEGSGPHDIIDDINS 577
           + H GN+++++++ +A+ MR +S+A+ LS +VKEILGTA SVGCTV+G  PHD+  +I++
Sbjct: 98  VAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDN 157

Query: 578 GALTI 592
           G + I
Sbjct: 158 GEIEI 162


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  177 bits (430), Expect = 1e-45
 Identities = 77/125 (61%), Positives = 106/125 (84%)
 Frame = +2

Query: 218 SPKKVGDDIAKATSDWKGLKITVQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKN 397
           SPKKVG+DIAKAT DWKGL++TV+L +QNRQA +SVVPSA+AL+I+ALKEP RDRKK KN
Sbjct: 38  SPKKVGEDIAKATKDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKN 97

Query: 398 IKHHGNITMEDVLGIAKIMRSRSMARYLSSSVKEILGTAQSVGCTVEGSGPHDIIDDINS 577
           + H GN+++++++ +A+ MR +S+A+ LS +VKEILGTA SVGCTV+G  PHD+  +I++
Sbjct: 98  VAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDN 157

Query: 578 GALTI 592
           G + I
Sbjct: 158 GEIEI 162


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 146 PANTSSDYLHNKFYHVINSN--FASQSP 223
           P N S+ +  N  YHV NSN   ASQ+P
Sbjct: 562 PKNLSTSWNQNMGYHVTNSNSELASQNP 589


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 467 LNENALSWQCQGHLPW*YFHGV*CSSAS 384
           L E+A +WQCQ    + YF  V CS  S
Sbjct: 652 LMEDAENWQCQHCKAFSYFSQVACSCKS 679


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 21  RXLPGG-GWKEPATQDPMPVSLSRLLR 98
           R  P G GWK P+  +P  + +S + R
Sbjct: 23  RIAPSGLGWKSPSLAEPFTLPISEIRR 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,365,047
Number of Sequences: 5004
Number of extensions: 43663
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)