Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_J12
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 175 2e-44
02_05_0416 + 28791512-28792012 174 5e-44
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 30 1.6
03_06_0776 - 36176390-36177589 29 2.8
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414 29 3.7
01_05_0636 + 23852985-23853142,23853253-23853445,23853910-238540... 28 6.4
11_03_0007 + 8892616-8892760,8893073-8893206,8893496-8893695,889... 27 8.5
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266... 27 8.5
04_04_0453 - 25346114-25346214,25346600-25346699,25346901-253469... 27 8.5
>04_04_1026 + 30214437-30214937
Length = 166
Score = 175 bits (426), Expect = 2e-44
Identities = 82/126 (65%), Positives = 107/126 (84%), Gaps = 1/126 (0%)
Frame = +2
Query: 218 SPKKVGDDIAKATS-DWKGLKITVQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQK 394
SPKK+G+DIAK T+ DWKGL++TV+L VQNRQA++SVVPSAAAL+I+ALKEP RDRKK K
Sbjct: 38 SPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVK 97
Query: 395 NIKHHGNITMEDVLGIAKIMRSRSMARYLSSSVKEILGTAQSVGCTVEGSGPHDIIDDIN 574
NIKH GNI+++DV+ IA+IMR+RSMA+ ++ +VKEILGT SVGCTV+G P D+ +I+
Sbjct: 98 NIKHSGNISLDDVIEIARIMRNRSMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEIS 157
Query: 575 SGALTI 592
G + I
Sbjct: 158 DGEVEI 163
>02_05_0416 + 28791512-28792012
Length = 166
Score = 174 bits (423), Expect = 5e-44
Identities = 81/126 (64%), Positives = 106/126 (84%), Gaps = 1/126 (0%)
Frame = +2
Query: 218 SPKKVGDDIAKATS-DWKGLKITVQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQK 394
SPKK+G+DIAK T+ DWKGL++TV+L VQNRQA++SVVPSAAAL+I+ALKEP RDRKK K
Sbjct: 38 SPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVK 97
Query: 395 NIKHHGNITMEDVLGIAKIMRSRSMARYLSSSVKEILGTAQSVGCTVEGSGPHDIIDDIN 574
NIKH GNI+++DV+ IA++MR RSMA+ ++ +VKEILGT SVGCTV+G P D+ +I+
Sbjct: 98 NIKHSGNISLDDVIEIARVMRPRSMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEIS 157
Query: 575 SGALTI 592
G + I
Sbjct: 158 DGEVEI 163
>12_02_0800 +
23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/82 (21%), Positives = 39/82 (47%)
Frame = +2
Query: 170 LHNKFYHVINSNFASQSPKKVGDDIAKATSDWKGLKITVQLIVQNRQAQISVVPSAAALI 349
L+NK +V N P K ++ K+TS + K+ + +++ Q++++ + +A L
Sbjct: 562 LNNKARNVDARNITEPFPSKQAKEMQKSTSSKEDQKLPNEPVLEPSQSELTEIITAGKL- 620
Query: 350 IRALKEPPRDRKKQKNIKHHGN 415
+ ++ R HHG+
Sbjct: 621 GESTRDRTHRRGDSSRSSHHGS 642
>03_06_0776 - 36176390-36177589
Length = 399
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +2
Query: 389 QKNIKHHGNITMEDVLGIAKIMRSRSMARYLSS 487
+K+I++ G++ +E + K+M SRSM RY ++
Sbjct: 113 EKSIQNIGSLELERNAAVEKLMSSRSMHRYYAA 145
>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
Length = 522
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 263 WKGLKITVQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQ 391
W + V V + + V+P+A A +IRA+ + P R++Q
Sbjct: 33 WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75
>01_05_0636 +
23852985-23853142,23853253-23853445,23853910-23854033,
23854285-23854637,23855525-23856530,23856892-23857085,
23857238-23857324
Length = 704
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Frame = +1
Query: 406 PWKYHHGRCPWHCQDNAFSFNG---TLPLKLS 492
P K H CPW C D + G TLP LS
Sbjct: 625 PMKQHRTFCPWICPDGGETLPGWRLTLPALLS 656
>11_03_0007 +
8892616-8892760,8893073-8893206,8893496-8893695,
8893809-8894090,8894185-8894243,8894345-8894381,
8894501-8894723,8894818-8894964,8895845-8895892
Length = 424
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 539 GSGPHDIIDDINSGALTI 592
G+G HDIID +NS TI
Sbjct: 351 GAGIHDIIDQVNSNIYTI 368
>07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,
2669578-2669921,2670544-2670667,2671350-2671599,
2672486-2672571
Length = 943
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/78 (23%), Positives = 30/78 (38%)
Frame = +2
Query: 173 HNKFYHVINSNFASQSPKKVGDDIAKATSDWKGLKITVQLIVQNRQAQISVVPSAAALII 352
HN + +N + A+ G + S W+ ++ I QAQ ++PS +A +
Sbjct: 863 HNNYCPWVNGHVAAACCINTGSSTSTGLSGWQLTVDALETIQSLAQAQNQIMPSDSAASL 922
Query: 353 RALKEPPRDRKKQKNIKH 406
RK K H
Sbjct: 923 YKDDHVAPSRKLLKRASH 940
>04_04_0453 -
25346114-25346214,25346600-25346699,25346901-25346962,
25347053-25347186,25347320-25347408,25347667-25347696
Length = 171
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 316 LRLSVLHYQLDRDLETLPVTSGFS 245
L+ S+LHY +++LE L +GFS
Sbjct: 129 LKSSILHYLTEKELEELAKEAGFS 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,817,101
Number of Sequences: 37544
Number of extensions: 333426
Number of successful extensions: 965
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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