Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_J12
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              25   0.42 
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   3.0  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   5.2  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   9.0  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   9.0  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   9.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.0  

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 491 VKEILGTAQSVGCTVEGSGPHDIIDDINSGALTI 592
           +K  L T QSV C  E      IIDDIN G + +
Sbjct: 22  LKSGLHTVQSV-CMKEIGTAQQIIDDINEGKINM 54


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 297 TINWTVILRPFQSLVALAMSSPTFFG 220
           +I   VIL  F  + AL++S P  FG
Sbjct: 11  SIRHAVILASFVWIYALSLSLPPLFG 36


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 565 IDDVMGATAFHSAS 524
           IDD +GA+A H AS
Sbjct: 334 IDDPVGASATHGAS 347


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 362 KEPPRDRKKQKNIKHH 409
           KE  RDRK+++  K H
Sbjct: 64  KERSRDRKEREKSKEH 79


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 362 KEPPRDRKKQKNIKHH 409
           KE  RDRK+++  K H
Sbjct: 64  KERSRDRKEREKSKEH 79


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 362 KEPPRDRKKQKNIKHH 409
           KE  RDRK+++  K H
Sbjct: 64  KERSRDRKEREKSKEH 79


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 429 SSMVIFPWCLMFFCFLRSR 373
           SS VIF    + F FLR+R
Sbjct: 14  SSCVIFGVLFVLFSFLRTR 32


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 429 SSMVIFPWCLMFFCFLRSR 373
           SS VIF    + F FLR+R
Sbjct: 14  SSCVIFGVLFVLFSFLRTR 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,790
Number of Sequences: 438
Number of extensions: 3387
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)