Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_J10
         (306 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904...    27   2.9  
07_01_0059 - 439518-439646,439767-439885,440003-440241,440320-44...    26   6.7  
02_01_0752 - 5583757-5584092                                           26   6.7  
03_02_0991 - 13034540-13034830,13035057-13035202,13035203-130353...    25   8.9  

>06_01_1101 -
          9044679-9045320,9045484-9045890,9046020-9046274,
          9046375-9046498,9047237-9047289,9047388-9047648,
          9047795-9047848,9047975-9048458,9048554-9048592
          Length = 772

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 52 GVGARRCGEWWWGR 11
          G  ARR G WWW R
Sbjct: 7  GAAARRKGGWWWWR 20


>07_01_0059 -
           439518-439646,439767-439885,440003-440241,440320-440376,
           440480-440566,440664-441208,441967-442026,443552-443935,
           444049-444114
          Length = 561

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 61  GKPGVGARRCGEWWWG 14
           G  G G RR   WWWG
Sbjct: 74  GGGGDGERRRRRWWWG 89


>02_01_0752 - 5583757-5584092
          Length = 111

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 55 PGVGARRCGEWWWG 14
          P  G RR   WWWG
Sbjct: 5  PPAGGRRQRAWWWG 18


>03_02_0991 -
           13034540-13034830,13035057-13035202,13035203-13035305,
           13037980-13038115,13038221-13038439,13038574-13038949,
           13040854-13041027,13041065-13041101
          Length = 493

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 169 VGCYFWIYKIHFGKE 213
           V CYFW Y ++F +E
Sbjct: 215 VECYFWSYSMYFEEE 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,571,342
Number of Sequences: 37544
Number of extensions: 82375
Number of successful extensions: 233
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)