Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_J06
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   226   8e-60
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...   181   3e-46
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...   136   1e-32
Z81577-1|CAB04651.3|  289|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z83246-1|CAB05842.2|  312|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z49969-3|CAA90267.1|  792|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  226 bits (553), Expect = 8e-60
 Identities = 106/182 (58%), Positives = 129/182 (70%)
 Frame = +2

Query: 38  MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 217
           MSKVSR++L E +  V++ S EK RKF ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP
Sbjct: 1   MSKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRP 60

Query: 218 KMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 397
            M+VC+ GDQ H DEA   D+P M                           SESLIKQIP
Sbjct: 61  NMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIP 120

Query: 398 RLLGPGLNKAGKFPGLLSHQESMTQKIDEVNGTIKFQMKKVLCLSVAVGHVDMTPDELVQ 577
           R+LGPGLNKAGKFP +++H ES+  K DE+  T+KFQMKKVLCLSVAVGHV +T +ELV 
Sbjct: 121 RILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVS 180

Query: 578 NV 583
           N+
Sbjct: 181 NI 182


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score =  181 bits (441), Expect = 3e-46
 Identities = 83/145 (57%), Positives = 100/145 (68%)
 Frame = +2

Query: 149 KNYDPQKDKRFSGTVKLKYIPRPKMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXX 328
           KNYDPQKDKRFSG+++LK+IPRP M+VC+ GDQ H DEA   D+P M             
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67

Query: 329 XXXXXXXXXXXXXXSESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVNGTIKFQ 508
                         SESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE+  T+KFQ
Sbjct: 68  LIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQ 127

Query: 509 MKKVLCLSVAVGHVDMTPDELVQNV 583
           MKKVLCLSVAVGHV +T +ELV N+
Sbjct: 128 MKKVLCLSVAVGHVGLTQEELVSNI 152


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score =  136 bits (328), Expect = 1e-32
 Identities = 64/121 (52%), Positives = 77/121 (63%)
 Frame = +2

Query: 221 MQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 400
           M+VC+ GDQ H DEA   D+P M                           SESLIKQIPR
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60

Query: 401 LLGPGLNKAGKFPGLLSHQESMTQKIDEVNGTIKFQMKKVLCLSVAVGHVDMTPDELVQN 580
           +LGPGLNKAGKFP +++H ES+  K DE+  T+KFQMKKVLCLSVAVGHV +T +ELV N
Sbjct: 61  ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSN 120

Query: 581 V 583
           +
Sbjct: 121 I 121


>Z81577-1|CAB04651.3|  289|Caenorhabditis elegans Hypothetical
           protein R11.1 protein.
          Length = 289

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 150 LRPICSSTVSKNLRFFSFEDWMTALTHS 67
           L PI + T  +  +FF+FE +  A THS
Sbjct: 65  LPPILAETPKRATKFFTFEQYKIAFTHS 92


>Z83246-1|CAB05842.2|  312|Caenorhabditis elegans Hypothetical
           protein ZK795.1 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 128 VELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCILGDQQH 253
           ++L++G   YDP          ++KY P+ KM + ILG + H
Sbjct: 135 LDLKMGQVTYDPIAKPEKIEKERIKYPPQAKMGMRILGYRIH 176


>Z49969-3|CAA90267.1|  792|Caenorhabditis elegans Hypothetical
           protein W01C9.3 protein.
          Length = 792

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 424 GWQVPWSLIPPGIHDTEN**SQWNHQIPNEEG 519
           GWQ  WS +P  +  T +  S +N  IP   G
Sbjct: 321 GWQQVWSWLPSPLQQTNSGQSMFNPPIPECNG 352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,284,957
Number of Sequences: 27780
Number of extensions: 225347
Number of successful extensions: 551
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)